| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 304,096 – 304,194 |
| Length | 98 |
| Max. P | 0.747138 |
| Location | 304,096 – 304,194 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.33 |
| Mean single sequence MFE | -37.08 |
| Consensus MFE | -22.23 |
| Energy contribution | -21.98 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 304096 98 - 27905053 AUUCGC--------AGCGGCAGCGUCAGUAGGCGAUGCCGAAGAGAGUCGCCGUGAAGCAACAGCCAA----CUAAAAGAGCAAAAGAGCUCACACGUGUCGG---------UGGCUAA .(((..--------..(((((.((((....)))).)))))..)))((((((((....((....))...----......((((......))))........)))---------))))).. ( -33.80) >DroSec_CAF1 39316 98 - 1 AUUCGC--------AGCGGCAGCGUCAGUAGGCGGUGCCGAAGAGAGCCGCCGCGAAGCAACAGCCAA----CUAAGAGAGCAGAAGAGCUCACACGUGUCGG---------CGCCUAA ....((--------..(((((.((((....)))).)))))......((((.((((..((....))...----......((((......))))...)))).)))---------))).... ( -37.80) >DroEre_CAF1 43723 107 - 1 AUUUGC--------AGUAGCAGCGGCAGCAGGCAGUGCCGAAGAGAGCCGCCGCGAAGCAACAGCCAA----CUAAGAGAGCAAAAGAGCUCACACGUGUCGGCUCUAGUGGCAGCUAA ......--------..((((.((....))......(((((...(((((((.((((..((....))...----......((((......))))...)))).)))))))..))))))))). ( -40.50) >DroYak_CAF1 43698 110 - 1 UUUCGCUAUGGUAUAGUAGCAGCGGCAGCAGGCGGUGCCGAAGAGAUCCGCCGCGAAGCAACAGCCAACAGACUAAGAGAGCAAAAGAGCUCACACGUGUCGG---------CGGCUAA (((((((((......)))))..(((((.(....).)))))..))))...(((((...((....)).....(((...(.((((......)))).)....))).)---------))))... ( -36.20) >consensus AUUCGC________AGCAGCAGCGGCAGCAGGCGGUGCCGAAGAGAGCCGCCGCGAAGCAACAGCCAA____CUAAGAGAGCAAAAGAGCUCACACGUGUCGG_________CGGCUAA .(((((...............((....)).(((((..(......)..)))))))))).....((((............((((......))))...((...))...........)))).. (-22.23 = -21.98 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:12 2006