Locus 4497

Sequence ID 3R_DroMel_CAF1
Location 11,921,950 – 11,922,042
Length 92
Max. P 0.598019
window7352

overview

Window 2

Location 11,921,950 – 11,922,042
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 82.45
Mean single sequence MFE -23.95
Consensus MFE -15.12
Energy contribution -16.15
Covariance contribution 1.03
Combinations/Pair 1.05
Mean z-score -1.99
Structure conservation index 0.63
SVM decision value 0.13
SVM RNA-class probability 0.598019
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11921950 92 + 27905053
AUUAGGAAAUUCUUAGAACAACAUACCUCCACGGUGACAGCCUCUCCGCUGUUCCGUAUCAUCUCAAUUAUGAUCUCCCGCGGCAGUUCCCC
..((((.....))))((((...........((((.((((((......))))))))))(((((.......)))))...........))))... ( -18.10)
>DroVir_CAF1 32760 91 + 1
AUUUGAA-AAUGUGUGUGUUACGAACCUCAACGGUGACAGCAUCGCCACUGUUGCGUAUCAUCUCGAUGAUGAUCUCGCGCGAUAAGUCGCC
.......-...((((.((((((...........)))))))))).((.((((((((((((((((.....))))))...))))))).))).)). ( -25.00)
>DroSim_CAF1 26597 92 + 1
AUUAGGAAAUUCUAAGAACAACAUACCUCCACGGUGACAGCCUCUCCGCUGUUCCGUAUCAUCUCAAUGAUGAUCUCCCGCGACAGUUCCCC
.(((((....)))))((((...........((((.((((((......))))))))))((((((.....))))))...........))))... ( -22.90)
>DroEre_CAF1 26506 92 + 1
AUUAGAGAAUUCUAAGAACUACAUACCUCCACGGUGACAGCCUCGCCGCUGUUCCGUAUCAUCUCAAUGAUGAUCUCUCGCGACAGUUCGCC
....((((......................((((.((((((......))))))))))((((((.....)))))).))))((((....)))). ( -26.50)
>DroYak_CAF1 26896 92 + 1
AUUAGGGAAUUCUAAGAACUACAUACCUCCACGGUGACAGCCUCGCCGCUGUUCCGUAUCAUCUCAAUGAUGAUCUCGCGCGACAAUUCGCC
....((((......................((((.((((((......)))))))))).(((((.....)))))))))..((((....)))). ( -25.30)
>DroMoj_CAF1 29431 88 + 1
GAUUGUA-AA---GUGCUUUACGUACCUCGACGGUGACAGCAUCGCCACUGUUGCGUAUCAUCUCGAUGAUGAUCUCGCGCGAUAAAUCGCC
((((((.-..---((((.....))))....))(((((.....)))))..((((((((((((((.....))))))...))))))))))))... ( -25.90)
>consensus
AUUAGGAAAUUCUAAGAACUACAUACCUCCACGGUGACAGCCUCGCCGCUGUUCCGUAUCAUCUCAAUGAUGAUCUCGCGCGACAAUUCGCC
..............................((((.((((((......))))))))))((((((.....)))))).....((((....)))). (-15.12 = -16.15 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:50 2006