Locus 4496

Sequence ID 3R_DroMel_CAF1
Location 11,920,314 – 11,920,404
Length 90
Max. P 0.532524
window7351

overview

Window 1

Location 11,920,314 – 11,920,404
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 86.73
Mean single sequence MFE -25.15
Consensus MFE -18.24
Energy contribution -18.77
Covariance contribution 0.53
Combinations/Pair 1.06
Mean z-score -2.77
Structure conservation index 0.73
SVM decision value -0.00
SVM RNA-class probability 0.532524
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11920314 90 - 27905053
GCGGCGGCUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAAGAGGCAAAGCCACAACAAAACAUGAA-AAACU-
(.(((.(((.....((((((((((((((...........)))).)))))))))).......)))...))).).............-.....- ( -25.30)
>DroSec_CAF1 25068 85 - 1
------GCUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAACGAACU-
------((((....((((((((((((((...........)))).))))))))))..)))).(((...))).....................- ( -22.20)
>DroSim_CAF1 24984 85 - 1
------GCUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAACGAACU-
------((((....((((((((((((((...........)))).))))))))))..)))).(((...))).....................- ( -22.20)
>DroEre_CAF1 24889 91 - 1
GCGGCGACUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAACGAACU-
(.(((..(((((..((((((((((((((...........)))).))))))))))..).)))).....))).)...................- ( -27.30)
>DroYak_CAF1 25291 91 - 1
GCGGUGACUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAAACAACU-
((..((.(((((..((((((((((((((...........)))).))))))))))..).)))).))..))......................- ( -26.10)
>DroAna_CAF1 43133 90 - 1
ACUGCGACUGCAGUUGUGUGUGCAUUUCUACGCCCACUUGGAGCUGCCUACACAAGCAGC-GCCAGAGUCGCCACA-AACAUGAUAGAAUGU
...((((((......(((.(((........))).)))((((.(((((........)))))-.))))))))))....-.((((......)))) ( -27.80)
>consensus
GCGGCGACUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAACGAACU_
.......((((...((((((((((((((...........)))).))))))))))....)))).............................. (-18.24 = -18.77 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:50 2006