Locus 4493

Sequence ID 3R_DroMel_CAF1
Location 11,904,826 – 11,904,936
Length 110
Max. P 0.796959
window7347

overview

Window 7

Location 11,904,826 – 11,904,936
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.25
Mean single sequence MFE -42.60
Consensus MFE -24.26
Energy contribution -24.35
Covariance contribution 0.09
Combinations/Pair 1.15
Mean z-score -2.04
Structure conservation index 0.57
SVM decision value 0.60
SVM RNA-class probability 0.796959
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11904826 110 - 27905053
GGCCCAGGUGCAAGCUGUGAGCUGCAUUCAGACACAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACUUGGCAGCGGC-AGC---------GCCGAUC
(((((((((.((....(((((((((((....((..((((((.((....))))))))...(....)..))....)))))))).)))))))))))..((...-.))---------))).... ( -41.60)
>DroPse_CAF1 11040 118 - 1
GGCACAGGUGCAGGCGGUGCGGUGCAUCCAAACGCAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACU-GCCACCCGG-UACGAGUACCCAGCAUAUC
.((...(((((((.(((((((((((((((....(.((((((.((....)))))))).).(....).)).....)))).))))))))).))-).)))).((-((....))))..))..... ( -47.40)
>DroGri_CAF1 11402 110 - 1
GGCUCAGGUGCAGGCGGUGCGCUGCAUCCAAACGCAGGUGGAGAUCUAUCCCACCUAUAUGAAAGAGGUAACUAUGCGGCUGCAGUAGCCAGCGAGUCCC-AAC---------AACAAUG
(((((.(((((((((...)).))))))).....((((((((.((....))))))))..........(((.(((..((....))))).))).)))))))..-...---------....... ( -36.20)
>DroMoj_CAF1 10220 111 - 1
GGCGCAGGUGCGGGCGGUGCGCUGCAUACAAACACAGGUGGAGAUCUAUCCCACCUAUAUGAAAGAGGUAACUAUGCAGCUGCACUAGCCAGCGAGUCCCCAGC---------AAUAAUG
.((...(((((.(((((((((((((((........((((((.((....)))))))).........((....))))))))).))))).))).)))...))...))---------....... ( -40.50)
>DroAna_CAF1 26819 102 - 1
GGCCCAGGUGCAGGCGGUGCGGUGCAUUCAGACCCAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACCUGGCAGAA------------------GAUC
.(((.((((.....(((((((((((((....(((.((((((.((....))))))))...(....).)))....)))).))))))))))))))))....------------------.... ( -42.50)
>DroPer_CAF1 11033 118 - 1
GGCACAGGUGCAGGCGGUGCGGUGCAUCCAAACGCAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACU-GCCACCCGG-UACGAGUACCCAGCAUAUC
.((...(((((((.(((((((((((((((....(.((((((.((....)))))))).).(....).)).....)))).))))))))).))-).)))).((-((....))))..))..... ( -47.40)
>consensus
GGCACAGGUGCAGGCGGUGCGCUGCAUCCAAACGCAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACC_GCCAGCCGC_AAC_________GCAAAUC
.((......)).(((((((((.(((((....((..((((((.((....))))))))...(....)..))....))))).).)))))).)).............................. (-24.26 = -24.35 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:46 2006