Locus 4490

Sequence ID 3R_DroMel_CAF1
Location 11,894,987 – 11,895,107
Length 120
Max. P 0.594380
window7342

overview

Window 2

Location 11,894,987 – 11,895,107
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -39.13
Consensus MFE -38.53
Energy contribution -39.53
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.98
SVM decision value 0.12
SVM RNA-class probability 0.594380
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11894987 120 + 27905053
UCCGGUUUGUUGGCCGGUAUGGCUUUGGCCGCCAGUGCCAGCUUAUGAAUGUGUGGCGACGAUGGCGACGUCACUGUUAUUCUACAAUAAGAAAAAGCUAAUUGUUUACACGCACACACA
....((..((((((((((..(((....)))))).).))))))..))...(((((((((..((((....))))..(((......(((((.((......)).)))))..)))))).)))))) ( -38.10)
>DroEre_CAF1 53217 120 + 1
UCCGGUUUGUGUGCCGGUAUGGCUUUGGCCGCCAGUGCCAGCUUAUGAAUGUGUGGCGACGAUGGCGACGUCACUGUUAUUCUACAAUAAGAAAAAGCUAAUGGUUUACACGCACACACA
....(((..((.((.((((((((.......)))).)))).)).))..)))((((((((..((((....))))(((((((((((......)))).....))))))).....))).))))). ( -37.80)
>DroYak_CAF1 52512 120 + 1
UCCGGUUUGUGGGCCGGUAUGGCUUUGGCCGCCAGUGCCAGCUUAUGAAUGUGUGGCGACGAUGGCGACGUCACUGUUAUUCUACAAUAAGAAAAAGCUAAUGGUUUACACGCACACACA
....(((..(((((.((((((((.......)))).)))).)))))..)))((((((((..((((....))))(((((((((((......)))).....))))))).....))).))))). ( -41.50)
>consensus
UCCGGUUUGUGGGCCGGUAUGGCUUUGGCCGCCAGUGCCAGCUUAUGAAUGUGUGGCGACGAUGGCGACGUCACUGUUAUUCUACAAUAAGAAAAAGCUAAUGGUUUACACGCACACACA
....(((..(((((.((((((((.......)))).)))).)))))..)))((((((((..((((....))))(((((((((((......)))).....))))))).....))).))))). (-38.53 = -39.53 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:41 2006