Locus 448

Sequence ID 3R_DroMel_CAF1
Location 1,708,846 – 1,708,948
Length 102
Max. P 0.656387
window726

overview

Window 6

Location 1,708,846 – 1,708,948
Length 102
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 89.84
Mean single sequence MFE -28.04
Consensus MFE -19.30
Energy contribution -19.70
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.69
SVM decision value 0.26
SVM RNA-class probability 0.656387
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1708846 102 - 27905053
-------UCGCAGGAAAACAGGCAG----CUCCUUGUGUUGAUAACAACAGAAGCGGGCCGAUAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC
-------..((..(....)..)).(----((((((.(((((....))))).))).)))).((((((.......(((....(((((((((....))))))))))))..)))))) ( -25.00)
>DroSec_CAF1 17752 105 - 1
-------UCGCAGGCAAACAGGCAGCUAGCUCCUUGUGUUGAUAACAACAGAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCA-UUGAUAACUCAAUUGAUUUCUAAUUGUC
-------.....(((((..(((..((..(((((((.(((((....))))).))).)))).)).................(((((-((((....)))).))))))))..))))) ( -22.90)
>DroSim_CAF1 19125 102 - 1
-------UCGCAGGCAAACAGGCAG----CUCCUUGUGUUGAUAACAACAGAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC
-------.....((((((((.((.(----((((((.(((((....))))).))).)))).))...)))...........((((((((((....)))))))))).....))))) ( -29.90)
>DroEre_CAF1 18736 108 - 1
CAGUCAGUCGGAGGCAAGCG-GCUG----CUUCUUGUGUUGAUAACAACAGAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC
..(.((((..((.(((.(((-((((----(((((...((((....)))))))))).))))))...)))...........((((((((((....))))))))))))..)))).) ( -35.90)
>DroYak_CAF1 18305 101 - 1
-------UCAAAGGCAAACU-GCUG----CUUCUUGUGUUGAUCACAACAAAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC
-------((((..(((...(-((.(----((((((.(((((....))))).))).)))).)))..)))...))))....((((((((((....)))))))))).......... ( -26.50)
>consensus
_______UCGCAGGCAAACAGGCAG____CUCCUUGUGUUGAUAACAACAGAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC
............(((((............((.(((.(((((....))))).))).))(((....).))...........((((((((((....)))))))))).....))))) (-19.30 = -19.70 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:25 2006