Locus 4476

Sequence ID 3R_DroMel_CAF1
Location 11,835,678 – 11,835,783
Length 105
Max. P 0.994199
window7318

overview

Window 8

Location 11,835,678 – 11,835,783
Length 105
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 94.47
Mean single sequence MFE -35.46
Consensus MFE -30.10
Energy contribution -31.10
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.29
Structure conservation index 0.85
SVM decision value 2.46
SVM RNA-class probability 0.994199
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11835678 105 + 27905053
GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCAGCGGUUGCAAAGCGCAGAGUGCAGCCGCCCAA-AAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCUCCAU---
(((((...((......))..)))))....(((..(((((((((..........)))))))))....-..(((((.(((.....))).)))))....))).......--- ( -36.20)
>DroSec_CAF1 15551 106 + 1
GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCAGCGGUUGCAAGGCGCAGAGUGCAGCCACCCAAAAAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCUCCAU---
(((((...((......))..)))))...........((.((((((((((.....)).))).........(((((.(((.....))).)))))..)))))...))..--- ( -34.10)
>DroSim_CAF1 17056 105 + 1
GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCAGCGGUUGCAAGGCGCAGAGUGCAGCCGCCCAA-AAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCUCCAU---
(((((...((......))..)))))....(((..(((((((((..........)))))))))....-..(((((.(((.....))).)))))....))).......--- ( -36.20)
>DroEre_CAF1 19517 104 + 1
GGGUUAAUAGAAUUUACUUGAACCCAAUUUGGCUGCGGUUGGAAAGCGCAGCGUGCAGCCGCCCAA--AGGGAGAGCCAUUACGGAACUUCCAUUUGCAUCUCCAU---
(((((...((......))..))))).....(((((((((((.......)))).)))))))...(((--((((((..((.....))..))))).)))).........--- ( -33.90)
>DroYak_CAF1 20060 108 + 1
GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCUGCGGUUGAAAAGCGCAGAGUGCAGCCGCCCAA-AAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCGCCAUGGC
(((((...((......))..))))).....(((.(((((((....((.....)).))))))).(((-(.(((((.(((.....))).))))).)))).........))) ( -36.90)
>consensus
GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCAGCGGUUGCAAAGCGCAGAGUGCAGCCGCCCAA_AAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCUCCAU___
(((((...((......))..)))))....(((..((((((((...((.....)))))))))).......(((((.(((.....))).)))))....))).......... (-30.10 = -31.10 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:18 2006