Locus 4474

Sequence ID 3R_DroMel_CAF1
Location 11,834,444 – 11,834,537
Length 93
Max. P 0.786854
window7316

overview

Window 6

Location 11,834,444 – 11,834,537
Length 93
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 82.44
Mean single sequence MFE -17.15
Consensus MFE -11.11
Energy contribution -12.98
Covariance contribution 1.87
Combinations/Pair 1.00
Mean z-score -2.54
Structure conservation index 0.65
SVM decision value 0.57
SVM RNA-class probability 0.786854
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11834444 93 + 27905053
GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUCUAUGUAUACCAUAUACAUAC---------------------
((((((...((((...(((((.((...(((....)))...))))))).....))))..)))))).........((((((((...)))))))).--------------------- ( -17.30)
>DroSec_CAF1 14333 93 + 1
GUCGAAAUCUUUGUUAAGAUACCUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUUUCCCUCUAUGUAUACCAUAUACAUAC---------------------
((((((((((..(...((((((((((.......)))))....)))))...)..)))).)))))).........((((((((...)))))))).--------------------- ( -18.50)
>DroSim_CAF1 15832 93 + 1
GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUCUAUGUAUACCAUAUACAUAC---------------------
((((((...((((...(((((.((...(((....)))...))))))).....))))..)))))).........((((((((...)))))))).--------------------- ( -17.30)
>DroEre_CAF1 18096 103 + 1
GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUGUAUGUAUUCCAUAUAC---CAUAUACAUAU--------UAG
((((((...((((...(((((.((...(((....)))...))))))).....))))..))))))........((((((((.........---...))))))))--------... ( -17.40)
>DroYak_CAF1 18576 114 + 1
GUCCAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUCUAUGUAUACCAUAUACAUACAUAUAUGUAUGUAUGUACACA
(((..(((.((((...(((((.((...(((....)))...))))))).....)))).))).)))...........((((((..(((((((((....))))))))).)))))).. ( -19.40)
>DroAna_CAF1 13193 79 + 1
GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUUCCGCUAUAUA-----------------------------------
((((((...((((...(((((.((...(((....)))...))))))).....))))..))))))...............----------------------------------- ( -13.00)
>consensus
GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUCUAUGUAUACCAUAUACAUAC_____________________
((((((((((..(...(((((.((...(((....)))...)))))))...)..)))).)))))).........(((((((.....)))))))...................... (-11.11 = -12.98 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:16 2006