Locus 4473

Sequence ID 3R_DroMel_CAF1
Location 11,819,729 – 11,819,824
Length 95
Max. P 0.896406
window7315

overview

Window 5

Location 11,819,729 – 11,819,824
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 96.48
Mean single sequence MFE -17.83
Consensus MFE -15.53
Energy contribution -15.87
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.81
Structure conservation index 0.87
SVM decision value 0.99
SVM RNA-class probability 0.896406
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11819729 95 - 27905053
CGGAACAGCAAAGCAACACGAAAAAAUAAAGCUCGUUAAAAAUGUUUUUUUUAGAAAACCAAAUCGAGAACAAAUCUCAUCGAGCAUCCUCUCUC
.(((...((...))................(((((........((((((....))))))......((((.....))))..))))).)))...... ( -16.70)
>DroSec_CAF1 23905 94 - 1
CGGAACAGCAAAGCAACAGAAAAAAAUAAAGCUCGUUAAAAUUGUUU-UUUUAGAAAACCAAAUCGAGAACAAAUCUCAGCGAGCAUCCUCUCUC
.(((...((...))................(((((((......((((-((...))))))......((((.....))))))))))).)))...... ( -18.40)
>DroSim_CAF1 24930 94 - 1
CGGAACAGCAAAGCAACACAAAAAAAUAAAGCUCGUUAAAAUUGUUU-UUUUAGAAAACCAAAUCGAGAACAAAUCUCAGCGAGCAUCCUCUCUC
.(((...((...))................(((((((......((((-((...))))))......((((.....))))))))))).)))...... ( -18.40)
>consensus
CGGAACAGCAAAGCAACACAAAAAAAUAAAGCUCGUUAAAAUUGUUU_UUUUAGAAAACCAAAUCGAGAACAAAUCUCAGCGAGCAUCCUCUCUC
.(((...((...))................(((((((......((((........))))......((((.....))))))))))).)))...... (-15.53 = -15.87 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:14 2006