| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,819,569 – 11,819,689 |
| Length | 120 |
| Max. P | 0.939337 |
| Location | 11,819,569 – 11,819,689 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.06 |
| Mean single sequence MFE | -32.93 |
| Consensus MFE | -27.64 |
| Energy contribution | -27.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11819569 120 + 27905053 AAUAGUGAUCUUAGGACAAGGAUAGAAAUUAAGAUGAUCGUCAUUUUUAUUUCUGUGCACCAACAUGCGAUUACGAUUACGAGUGGCGCUCGUGUAACGGCAUGUAGAGCAAAGUGCUAA ...........(((.((..(.((((((((.((((((.....)))))).)))))))).)....((((((..((((....(((((.....)))))))))..))))))........)).))). ( -33.70) >DroSec_CAF1 23749 116 + 1 ----GUGAUCUUAGGACAAGGAUAGAAAUUAAAAUGAUAGUAAUUUUUAUUUCGGUGCACCAACAUGCGAUUACGAUUACGAGUGGUGCUCGUGUAACGGCAUGUGGAGCAAAGCGCUAA ----(((........((..((((((((((((.........))))))))))))..))((.(((.(((((..((((....(((((.....)))))))))..)))))))).))....)))... ( -30.80) >DroSim_CAF1 24770 120 + 1 AAUGGUGAUCCUAGGACAAGGAUAGAAAUUAAGAUGAUCGUAAUUUUUAUUUCGGUGCACCAACAUGCGAUUACGAUUACGAGUGGCGCUCGUGUAACGGCAUGUAGAGCAAAGCGCUAA ..((((((((((......))))).(((((.(((((.......))))).)))))....)))))((((((..((((....(((((.....)))))))))..))))))..(((.....))).. ( -34.30) >consensus AAU_GUGAUCUUAGGACAAGGAUAGAAAUUAAGAUGAUCGUAAUUUUUAUUUCGGUGCACCAACAUGCGAUUACGAUUACGAGUGGCGCUCGUGUAACGGCAUGUAGAGCAAAGCGCUAA ....((((((((......))))).(((((.(((((.......))))).)))))....)))..((((((..((((....(((((.....)))))))))..))))))..(((.....))).. (-27.64 = -27.20 + -0.44)
| Location | 11,819,569 – 11,819,689 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.06 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -25.30 |
| Energy contribution | -24.64 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.939337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11819569 120 - 27905053 UUAGCACUUUGCUCUACAUGCCGUUACACGAGCGCCACUCGUAAUCGUAAUCGCAUGUUGGUGCACAGAAAUAAAAAUGACGAUCAUCUUAAUUUCUAUCCUUGUCCUAAGAUCACUAUU ((((.((..(((.((((((((.((((((((((.....)))))....))))).))))).))).))).((((((.((.(((.....))).)).))))))......)).)))).......... ( -28.80) >DroSec_CAF1 23749 116 - 1 UUAGCGCUUUGCUCCACAUGCCGUUACACGAGCACCACUCGUAAUCGUAAUCGCAUGUUGGUGCACCGAAAUAAAAAUUACUAUCAUUUUAAUUUCUAUCCUUGUCCUAAGAUCAC---- ((((.((..(((.((((((((.((((((((((.....)))))....))))).))))).))).)))..(((((.(((((.......))))).))))).......)).))))......---- ( -29.40) >DroSim_CAF1 24770 120 - 1 UUAGCGCUUUGCUCUACAUGCCGUUACACGAGCGCCACUCGUAAUCGUAAUCGCAUGUUGGUGCACCGAAAUAAAAAUUACGAUCAUCUUAAUUUCUAUCCUUGUCCUAGGAUCACCAUU ..(((.....)))..((((((.((((((((((.....)))))....))))).))))))(((((...........((((((.(.....).))))))..(((((......)))))))))).. ( -27.10) >consensus UUAGCGCUUUGCUCUACAUGCCGUUACACGAGCGCCACUCGUAAUCGUAAUCGCAUGUUGGUGCACCGAAAUAAAAAUUACGAUCAUCUUAAUUUCUAUCCUUGUCCUAAGAUCAC_AUU ((((.((..(((.((((((((.((((((((((.....)))))....))))).))))).))).)))..(((((...................))))).......)).)))).......... (-25.30 = -24.64 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:13 2006