Locus 4470

Sequence ID 3R_DroMel_CAF1
Location 11,818,011 – 11,818,131
Length 120
Max. P 0.760187
window7311

overview

Window 1

Location 11,818,011 – 11,818,131
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -41.80
Consensus MFE -37.61
Energy contribution -37.83
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -2.09
Structure conservation index 0.90
SVM decision value 0.50
SVM RNA-class probability 0.760187
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11818011 120 - 27905053
UAGAAUUUCAGGACAAAUCUCGUGGCGCGACAAGUGAACGUGAGAAAAAUGAUGGGGAAAGACUUUCCCCAGGAGUCCGUCUGCAUUUGGCCCAUGCAAAUUCCCGAGACGUCGCGCCAA
......................(((((((((.......(....)........(((((((.....)))))))...(((((..(((((.......)))))......)).)))))))))))). ( -37.20)
>DroSec_CAF1 22336 119 - 1
UAGAAUUUCAGGACAAAUCUCGCGGCGCGACAAGUGAACGUGAGAA-AAUGCUGGGGAAAGACUUUCCUCAGGAGUCCGUCUGCGUUUGCCCCUUGCAAAUUCCCGAGACGUCGCGCCAA
.......................((((((((..(..(((((.(((.-..(.((((((((.....)))))))).).....))))))))..)..((((........))))..)))))))).. ( -42.40)
>DroSim_CAF1 23327 120 - 1
UAGAAUUUCAGGACAAAUCUCGCGGCGCGACAAGUGAACGUGAGAAAAAUGCUGGGGAAAGACUUUCCCCAGGAGUCCGUCUGCGUUUGCCCCUUGCAAAUUCCCGAGACGUCGCGCCAA
.......................((((((((..(..(((((.(((....(.((((((((.....)))))))).).....))))))))..)..((((........))))..)))))))).. ( -45.80)
>consensus
UAGAAUUUCAGGACAAAUCUCGCGGCGCGACAAGUGAACGUGAGAAAAAUGCUGGGGAAAGACUUUCCCCAGGAGUCCGUCUGCGUUUGCCCCUUGCAAAUUCCCGAGACGUCGCGCCAA
.......................((((((((.......(....).......((((((((.....))))))))..(((((...(.((((((.....)))))).).)).))))))))))).. (-37.61 = -37.83 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:10 2006