Locus 447

Sequence ID 3R_DroMel_CAF1
Location 1,707,876 – 1,707,989
Length 113
Max. P 0.764677
window725

overview

Window 5

Location 1,707,876 – 1,707,989
Length 113
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 83.38
Mean single sequence MFE -22.60
Consensus MFE -16.34
Energy contribution -16.23
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -2.05
Structure conservation index 0.72
SVM decision value 0.51
SVM RNA-class probability 0.764677
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1707876 113 + 27905053
CUGAGUUUUGUUAUGGUUUAUUUGAUAAACAGAAAUGGUAACCAGAUGGUAGCAAAAAAACUCGACAUAAAUCCUUUGUCAUUUCAGCACACAAAACAGUGUUGAAGCUUAAA
..((((((((((((.((((..(((.....((....)).)))..)))).))))))...))))))((((.........)))).(((((((((........)))))))))...... ( -27.10)
>DroSec_CAF1 16810 90 + 1
---------------------UUAAUAAUCAGAAAUUGUAACCAGAUGGUAGCAAA-AAACUCGGCAUAAAUCCUUUGUCAUUUUAGCACACA-AACAGUGUUGAAGCUUAAA
---------------------..............((((.(((....))).)))).-......((((.........)))).(((((((((...-....)))))))))...... ( -16.00)
>DroSim_CAF1 18165 111 + 1
CUGAGUUUUGUUAUGGUUUAUUUAAUAAUCAGAAAUUGUAACCAGAUGGUAGCAAA-AAACUCGGCAUAAAUCCUUUGUCAUUUUAGCACACA-AACAGUGUUGAAGCUUAAA
..(((((((....(((((........)))))....((((.(((....))).)))))-))))))((((.........)))).(((((((((...-....)))))))))...... ( -24.70)
>consensus
CUGAGUUUUGUUAUGGUUUAUUUAAUAAUCAGAAAUUGUAACCAGAUGGUAGCAAA_AAACUCGGCAUAAAUCCUUUGUCAUUUUAGCACACA_AACAGUGUUGAAGCUUAAA
...................................((((.(((....))).))))........((((.........)))).(((((((((........)))))))))...... (-16.34 = -16.23 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:24 2006