Locus 4468

Sequence ID 3R_DroMel_CAF1
Location 11,816,262 – 11,816,382
Length 120
Max. P 0.900951
window7309

overview

Window 9

Location 11,816,262 – 11,816,382
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -33.45
Consensus MFE -31.99
Energy contribution -32.11
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.17
Structure conservation index 0.96
SVM decision value 1.02
SVM RNA-class probability 0.900951
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11816262 120 + 27905053
AACCCAUUUUCGGCCACCAUAAAUAUGUCAAAAUAGUUUGAAGCCAAACUUAGUGGCAUUAAACCCUGGAUUUCGUGAGUACGUGUGCGUUUCACUUUGGUCUCGUGGGAUAUACAAAUA
..(((((....((((((((.....((((((....((((((....))))))...)))))).......))).....(((((.(((....))))))))..)))))..)))))........... ( -34.20)
>DroSec_CAF1 20589 120 + 1
AACCCAUUUUCGGCCACCAUAAAUAUGUCAAAAUAGUUUGAAGCCAAACUUAGUGGCAUUAAACCCGGGAUUUCGUGUGUACGUGUGCGUUGCACUUUGGUCUCGUGGGAUAUACAAAUA
..(((((....(((((((......((((((....((((((....))))))...))))))........)).....(((((.(((....))))))))..)))))..)))))........... ( -32.94)
>DroSim_CAF1 21604 120 + 1
AACCCAUUUUCGGCCACCAUAAAUAUGUCAAAAUAGUUUGAAGCCAAACUUAGUGGCAUUAAACCCGGGACUUCGUGUGUACGUGUGCGUUUCACUUUGGUCUCGUGGGAUAUACAAAUA
..((((......((((((((....))).......((((((....))))))..)))))........(((((((..(((...(((....)))..)))...)))))))))))........... ( -33.20)
>consensus
AACCCAUUUUCGGCCACCAUAAAUAUGUCAAAAUAGUUUGAAGCCAAACUUAGUGGCAUUAAACCCGGGAUUUCGUGUGUACGUGUGCGUUUCACUUUGGUCUCGUGGGAUAUACAAAUA
..(((((....(((((((......((((((....((((((....))))))...))))))........)).....(((((.(((....))))))))..)))))..)))))........... (-31.99 = -32.11 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:08 2006