Locus 4464

Sequence ID 3R_DroMel_CAF1
Location 11,811,682 – 11,811,786
Length 104
Max. P 0.999803
window7297

overview

Window 7

Location 11,811,682 – 11,811,786
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 99.23
Mean single sequence MFE -40.80
Consensus MFE -40.76
Energy contribution -40.80
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -2.95
Structure conservation index 1.00
SVM decision value 4.12
SVM RNA-class probability 0.999803
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11811682 104 - 27905053
CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA
((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -41.50)
>DroSec_CAF1 16049 104 - 1
CAGCAAAGUAACGAUUGAACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA
((((.((((.........))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -39.90)
>DroSim_CAF1 16424 104 - 1
CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA
((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -41.50)
>DroEre_CAF1 16342 104 - 1
CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA
((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -41.50)
>DroYak_CAF1 16340 104 - 1
CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGUGUAGUUUGGCUGUCGCCGGUUCCGCUGA
((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -39.60)
>consensus
CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA
((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). (-40.76 = -40.80 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:57 2006