| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,810,917 – 11,811,016 |
| Length | 99 |
| Max. P | 0.924053 |
| Location | 11,810,917 – 11,811,016 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.55 |
| Mean single sequence MFE | -32.46 |
| Consensus MFE | -11.68 |
| Energy contribution | -13.68 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.36 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11810917 99 + 27905053 UACCAGACUCUUUGGCAUUUCCCUGGUGGG-------AAAUAAACUUCA--UCAUAAACUUCAUCGAAAGGG------------GGGGUGUGUAGGGAGAAUAGUAGGAGUGCCAUAGAU ........(((.(((((((((((....)))-------))))...((((.--.((((..((((..(....)))------------))..))))...))))............)))).))). ( -30.40) >DroSec_CAF1 15201 116 + 1 UACCAGACUCUUUGGCAUUUCCCUGGUGGUUUCGGUUAUACAAAGCUCUGCUGUUUAACUUUAUGGAAAGACUCCCCCUUUCCAUGAAGAUCC----AGUAUAGUAGGAGUGCCAUAGAU ........(((.(((((((((.((((.....)))).........(((.(((((..(..((((((((((((.......)))))))))))))..)----)))).))).))))))))).))). ( -38.40) >DroSim_CAF1 15595 104 + 1 UACCAGACUCUUUGGCAUUUCCCUGGUGGUUUCGGUUAUACAAAGCUCUGCUGUUCAACUUCAUGGAAAGGG------------GAGUGGUCU----AGAAUAGUAGGAGUGCCAUAAAU ............(((((((((.((((.....))))(((.((...(((((.((.((((......)))).)).)------------)))).)).)----)).......)))))))))..... ( -25.80) >DroEre_CAF1 15555 100 + 1 UGUCAGACUUUUUGGCAUUGCCCUGGUUGUUUCGGUUAU----AGCCCUGCUGUUGAACAUCAUCGAUAGUG------------GAGUGAUCC----AGAAUAGUAGGAGUGCCAUAGAU .......((...(((((((..((((.(.(((..((....----.((.(..(((((((......)))))))..------------).))...))----..)))).))))))))))).)).. ( -29.50) >DroYak_CAF1 15535 100 + 1 UACCAGACUCUUUGGCAUUGCCCCGGUUGUUUCGGUUGU----AGCUCUGCGGUUGAACUUCAUCGAUAGGG------------GAGUGAGCC----GGAAUAGUAGGAGUGCCAUAGAU ........(((.(((((((...((..(((((((((((..----.(((((.(.(((((......))))).).)------------)))).))))----)))))))..))))))))).))). ( -38.20) >consensus UACCAGACUCUUUGGCAUUUCCCUGGUGGUUUCGGUUAUA_AAAGCUCUGCUGUUGAACUUCAUCGAAAGGG____________GAGUGAUCC____AGAAUAGUAGGAGUGCCAUAGAU ........(((.(((((((...((((.....))))...........(((((((((............................................)))))))))))))))).))). (-11.68 = -13.68 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:52 2006