Locus 4458

Sequence ID 3R_DroMel_CAF1
Location 11,807,719 – 11,807,839
Length 120
Max. P 0.648676
window7285

overview

Window 5

Location 11,807,719 – 11,807,839
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.22
Mean single sequence MFE -42.45
Consensus MFE -28.64
Energy contribution -28.25
Covariance contribution -0.39
Combinations/Pair 1.32
Mean z-score -1.44
Structure conservation index 0.67
SVM decision value 0.24
SVM RNA-class probability 0.648676
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11807719 120 + 27905053
GUUUGACUUUUUAAUGCCCGGCUUCCUUGGCACUGAGAAGCAGUUCGUGCAACGCUUUUCACGUCCCAUUCUGUCAUCUCGGGAUGCAAAGAGCUCUGCCAAGGAGCAGGAAGCUGGAGU
...............(((((((((((((((.((((((((((.(((.....))))))))))).)).))).(((..((((....))))...)))(((((.....))))))))))))))).)) ( -43.70)
>DroPse_CAF1 13178 120 + 1
CUUCGACUUCCUAAUGCCGGGCUUUCUGGGCACCGAGAAGCAGUUUAUCCAACGCUUCUCACGGCCCAUUUUGGCAUCGCGCGAUGCCAAGAGUUCACCCAAAGAGCAGGAGGCCGGUGU
.............(((((((.((((((((((...(((((((.(((.....))))))))))...)))).((((((((((....))))))))))((((.......))))))))))))))))) ( -52.60)
>DroGri_CAF1 16689 120 + 1
GUUUGAUUUCCUAAUGCCUGGCUUCCUCGGCACCGAGAAGCAGUUCAUUCAACGCUAUUCCCGUCCUAUUCUAGCGUCGCGCGACGGCAAAACCUCACCCAAGGAGCAGGAGGCCGGUGU
.............(((((.((((((((..((.(((((.(((.(((.....)))))).)))(((((........(((...))))))))...............)).))))))))))))))) ( -33.30)
>DroWil_CAF1 14088 120 + 1
GUUCGAUUUCUUAAUGCCGGGAUUUCUGGGCACAGAGAAGCAAUUCAUUCAACGUUUCUCCCGUCCCAUUUUGGCAUCGCGGGAUGCUAAGAGUUCACCCAAAGAUCAGGAAGCUGGCGU
.............(((((((..((((((((.((.(((((((............)))))))..)).)).((((((((((....))))))))))..............)))))).))))))) ( -37.50)
>DroMoj_CAF1 15349 120 + 1
GUUUGAUUUCCUAAUGCCUGGCUUUCUGGGCACUGAGAAACAGUUUAUCCAACGGUACUCUCGGCCCAUAUUGGCCUCACGCGAUGGCAAAAGCUCGGCCAAGGAGCAGGAAGCUGGCGU
.............(((((.((((((((((((...((((.((.(((.....))).))..)))).))))...((((((((....)).(((....))).)))))).....))))))))))))) ( -39.10)
>DroAna_CAF1 11695 120 + 1
GUUCGACUUCCUGAUGCCGGGCUUCCUCGGAACUGAGAAGCAGUUCGUUCAGCGCUUCUCACGGCCAAUCUUAGCUUCGCGCGACGCCAAGAGCUCUGCCAAGGAGCAGGAGGCCGGCGU
.............(((((((.((((((.((...((((((((.(((.....)))))))))))...))..((((.((.((....)).)).))))(((((.....)))))))))))))))))) ( -48.50)
>consensus
GUUCGACUUCCUAAUGCCGGGCUUCCUGGGCACUGAGAAGCAGUUCAUUCAACGCUUCUCACGGCCCAUUUUGGCAUCGCGCGAUGCCAAGAGCUCACCCAAGGAGCAGGAAGCCGGCGU
.............(((((.((((((((.((....(((((((.(((.....))))))))))....)).......(((((....)))).)....((((.......))))))))))))))))) (-28.64 = -28.25 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:45 2006