Locus 4454

Sequence ID 3R_DroMel_CAF1
Location 11,794,174 – 11,794,272
Length 98
Max. P 0.939793
window7281

overview

Window 1

Location 11,794,174 – 11,794,272
Length 98
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 72.12
Mean single sequence MFE -37.23
Consensus MFE -15.70
Energy contribution -18.15
Covariance contribution 2.45
Combinations/Pair 1.19
Mean z-score -2.19
Structure conservation index 0.42
SVM decision value 1.30
SVM RNA-class probability 0.939793
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11794174 98 + 27905053
GCCGAUCCCGGCGGUGCGU---UGGCAUCUGACACUGGACCGCUGCUUGGUGGUGUAGUAUCUA--UGGCGGGAGUUGGAUGU--C----UAAGUAUUAUAGUUUAUGA
((((....))))(((((..---.((((((..((((((.((((((....)))))).)))).(((.--.....)))))..)))))--)----...)))))........... ( -38.10)
>DroPse_CAF1 150535 93 + 1
ACCGGUCCCCCCGGUGCACUUGGGGCUUCGGCAACAGGUGCACUGAUUGGCGGUGUGGUAUCUAGAUGACCAGAG----------------AAGUUCAUUAAUCUUUCC
((((..((((.(((((((((((..((....))..)))))))))))...)).))..)))).....(((((.(....----------------..).)))))......... ( -36.00)
>DroSec_CAF1 126911 98 + 1
GCCGAUCCCGGCGGUGCGU---UGGUAUCUGGCACUGGACCGCUGCUUGGCGGUGUGGUAUCUA--UGGCGGGAGUUAGAUGU--C----UAAGUACCAUAGUUUAUGA
((((....))))(((((.(---(((((((((((((((.((((((....)))))).)))).(((.--.....))))))))))).--)----))))))))........... ( -40.30)
>DroSim_CAF1 128520 98 + 1
GCCGAUCCCGGCGGUGCGU---UGGCAUCUGGCACUGGACCGCUGCUUGGCGGUGUGGUAUCUA--UGGCGGGAGUUAGAUGU--C----UAAGUACCAUAGUUUAUGA
((((....))))(((((..---.((((((((((((((.((((((....)))))).)))).(((.--.....))))))))))))--)----...)))))........... ( -44.20)
>DroYak_CAF1 131519 104 + 1
GCCGAUCCCGGCGGUGCGU---UGGCAUCUGCAACUGGGCCGCUACUCGGCGGUGUGGUAUCUA--UGACGGAAGUGAAAUAUAUUGGAGUAAGUACAAUAGUUUAUGA
((((....))))(((((..---..)))))....((((.((((((....)))))).)))).....--(.((....)).)....(((((.........)))))........ ( -30.70)
>DroPer_CAF1 147615 93 + 1
ACCGGUCCCCCCGGUGCACUUGGGGCCUCGGCAACAGGUGCACUGAUUGGCGGUGUGGUAUCUAGAUGACCAGAG----------------AAGUUCAUUAAUCUUUCC
((((..((((.(((((((((((..((....))..)))))))))))...)).))..)))).....(((((.(....----------------..).)))))......... ( -34.10)
>consensus
GCCGAUCCCGGCGGUGCGU___UGGCAUCUGCAACUGGACCGCUGCUUGGCGGUGUGGUAUCUA__UGACGGGAGUUAGAUGU__C____UAAGUACAAUAGUUUAUGA
.....(((((.((((((.......)))))....((((.((((((....)))))).))))........).)))))................................... (-15.70 = -18.15 +   2.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:41 2006