Locus 445

Sequence ID 3R_DroMel_CAF1
Location 1,701,210 – 1,701,304
Length 94
Max. P 0.849310
window722

overview

Window 2

Location 1,701,210 – 1,701,304
Length 94
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 79.51
Mean single sequence MFE -28.94
Consensus MFE -17.70
Energy contribution -18.32
Covariance contribution 0.61
Combinations/Pair 1.13
Mean z-score -2.04
Structure conservation index 0.61
SVM decision value 0.78
SVM RNA-class probability 0.849310
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1701210 94 - 27905053
--GGGUGUUGGUCGUACAAUAUUUACACUGCUGUGC-GAAAGCCGCAAACUAAGGACUUGACUUUUAUGCGGCCAACAGCAGCAAGGACCAAGGAAC----
--(..(.(((((((((.......))).(((((((..-....((((((....(((.......)))...))))))..)))))))....)))))).)..)---- ( -31.00)
>DroPse_CAF1 8576 88 - 1
ACUGGUGUUGGCGCUACAAUAUUUACACUGCUCUGCCGAAAGCCGCAAACUAAAGACUUGACUUUCAUGCGGCCAGUUUCCA----GAGCAG---------
...(((((((......)))))))....((((((((..((((((((((....((((......))))..))))))...))))))----))))))--------- ( -28.40)
>DroSec_CAF1 10371 97 - 1
--GGGUGUUGGUCGUACAAUAUUUACAGUGCUGUGC-GAAAGCCGCAAACUAAGGACUUGACUUUUAUGCGGCCAGCAGCAGCAAGGUCCAAGGACC-AAG
--((((((((......))))))))....((((((((-....((((((....(((.......)))...))))))..))).))))).((((....))))-... ( -35.00)
>DroEre_CAF1 11226 97 - 1
--GGGUGUUGGUCGUACAAUAUUUACAUUGCUGUGC-GAAAGCCGCAAACUAAGGACUUGGCUUUUAUGCGGCCAGCAGCAACAAGGAGCAGGGAAC-AAG
--.(.(((((((((((...........((((.(.((-....))))))).((((....))))......))))))))))).)...........(....)-... ( -27.70)
>DroAna_CAF1 8548 98 - 1
--GGGUGUUGGCGCUACAAUAUUUACAGUGCUCUGC-GAAAGCCGCAAACUAAAGACUUGACUUUUAUGCGGCCAGGAGCAACAAGAAAACAACAACAAAC
--(..((((((((((...........)))))..(((-....((((((....((((......))))..)))))).....)))............)))))..) ( -24.50)
>DroPer_CAF1 8903 88 - 1
ACUGGUGUUGGCGCUACAAUAUUUACAGUGCUCUGCCGAAAGCCGCAAACUAAAGACUUGACUUUCAUGCGGCCAGUAUCCA----GAGCAG---------
((((((((((......))))))...))))((((((......((((((....((((......))))..)))))).......))----))))..--------- ( -27.02)
>consensus
__GGGUGUUGGCCCUACAAUAUUUACAGUGCUCUGC_GAAAGCCGCAAACUAAAGACUUGACUUUUAUGCGGCCAGCAGCAACAAGGAGCAAGGAAC____
..((((((((......)))))))).....(((((.......((((((....((((......))))..))))))..)))))..................... (-17.70 = -18.32 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:21 2006