Locus 4448

Sequence ID 3R_DroMel_CAF1
Location 11,761,296 – 11,761,394
Length 98
Max. P 0.970855
window7274

overview

Window 4

Location 11,761,296 – 11,761,394
Length 98
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 94.83
Mean single sequence MFE -22.40
Consensus MFE -18.72
Energy contribution -18.76
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -2.03
Structure conservation index 0.84
SVM decision value 1.67
SVM RNA-class probability 0.970855
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11761296 98 - 27905053
ACACGCCACGCUCGAGUUUCUUUUCUUUUUGGGUUUAUAGCUA--UUCGCUAUUUGCACAACUAAAGUAAU-UUGAGUCGCAGCCAAUUACCACUUGAGCU
....((...(((((((((.((((.....(((.((..(((((..--...)))))..)).)))..)))).)))-)))))).))((((((.......))).))) ( -22.90)
>DroSec_CAF1 94144 97 - 1
ACACGCCACGCUCGAGUUUCUUUUCUU-UUGGGUUUAUAGCUA--UUCGCUAUUUGCACAACUAAAGUAAU-UUGAGUCGCAGCCAAUUACCACUUGAGCU
....((...(((((((((.((((....-(((.((..(((((..--...)))))..)).)))..)))).)))-)))))).))((((((.......))).))) ( -23.60)
>DroSim_CAF1 95905 98 - 1
ACACGCCACGCUCGAGUUUCUUUUCUU-UUGGGUUUAUAGCUA--UUCGCUAUUUGCACAACUAAAGUAAUUUUGAGUCGCAGCCAAUUACCACUUGAGCU
.........((((((((..........-(((.((..(((((..--...)))))..)).))).....(((((((((.....)))..)))))).)))))))). ( -21.60)
>DroEre_CAF1 94599 97 - 1
ACACGCCACGCUCGAGUUUCUUUUGUU-UUUGGUUAAUAGUUU--UUCGCUAUUUUCACAACUAAAGUAAU-UUGAGUCGCAGCCAAUUACCACUUGAGCU
....((...(((((((((.((((.(((-..(((..((((((..--...)))))).))).))).)))).)))-)))))).))((((((.......))).))) ( -21.20)
>DroYak_CAF1 98428 99 - 1
ACACGCCACGCUCGAGUUUCUUUUGUU-UUUAGUUUAUAGCUCUAUUCGCUAUUUGCACAACUAAAGUAAU-UUGAGUCGCAGCCAAUUACCACUUGAGCU
....((...(((((((((.((((.(((-....((..(((((.......)))))..))..))).)))).)))-)))))).))((((((.......))).))) ( -22.70)
>consensus
ACACGCCACGCUCGAGUUUCUUUUCUU_UUGGGUUUAUAGCUA__UUCGCUAUUUGCACAACUAAAGUAAU_UUGAGUCGCAGCCAAUUACCACUUGAGCU
.........((((((((...............((..(((((.......)))))..)).........(((((.(((.....)))...))))).)))))))). (-18.72 = -18.76 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:34 2006