| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,734,368 – 11,734,466 |
| Length | 98 |
| Max. P | 0.837638 |
| Location | 11,734,368 – 11,734,466 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.33 |
| Mean single sequence MFE | -32.12 |
| Consensus MFE | -18.23 |
| Energy contribution | -18.73 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11734368 98 + 27905053 UGCCAGAAGCUAAAGAGAUUUGUGAUCGUAGGCUUGCUGAUCACCAUUGGCAUUUUGAGCUGGCACUUCUACGGUGAGUU-GUCUCUUUA-----AGC-UCUCUU----- ....(((((((((((((((...(.((((((((..(((((.(((............)))..)))))..)))))))).)...-)))))))).-----)))-).))).----- ( -29.90) >DroPse_CAF1 75116 104 + 1 UGCCAGAAGCUAAAGAGAUUUGUGAUCGUGGGCCUGCUCAUCACCAUUGGGAUCUUGAGUUGGCAUUUCUAUGGUGAGUCUCUCUCUUGG--A-UGAC-UCUCUU--UGG .........(((((((((....(.((((((((((.(((((...((....))....))))).)))....))))))).)((((((.....))--)-.)))-))))))--))) ( -30.10) >DroSec_CAF1 67269 98 + 1 UGCCAGAAGCUGAAGAGAUUCGUGAUCGUAGGCCUGCUGAUCACCAUUGGCAUUUUGAGCUGGCACUUCUACGGUAAGUU-UUCUCUUUA-----AGC-UCUCUU----- ....((((((((((((((......((((((((((.(((.(...((...)).....).))).)))....))))))).....-.))))))).-----)))-).))).----- ( -29.00) >DroEre_CAF1 67528 103 + 1 UGCCAGAAGCUGAAGAGAUUCGUAAUCGUGGGCCUGCUGGUCACCAUUGGCAUCUUGAGCUGGCACUUCUACGGUGAGUU-GUCUCUUUAGCUUUAGC-UGUGUU----- .((..((((((((((((((.....((((((((..(((..((((............))).)..)))..)))))))).....-)))))))))))))).))-......----- ( -39.00) >DroYak_CAF1 71092 106 + 1 UGCCAGAAGCUGAAGAGAUUCGUGAUCGUGGGCCUGCUGAUCACCAUUGGCAUCUUGAGCUGGCACUUCUACGGUCAGUU-GUCUCUUUAGCUCUAGC-UAUUAU--UUC .((.(((.(((((((((((...((((((((((((.(((.(...((...)).....).))).)))....)))))))))...-)))))))))))))).))-......--... ( -40.70) >DroMoj_CAF1 84990 104 + 1 UGCCAGAAAAUUAAAAGAUUCGUGAUCAUCGGACUGCUGAUCACCAUUGGCAUACUGAGCUGGCAUUUCUAUGGUGCGUA-AUAUAUACA-----CACAUUUAUUACGAC ((((((..........((((...)))).((((..(((..((....))..)))..)))).))))))...........((((-(((.((...-----...)).))))))).. ( -24.00) >consensus UGCCAGAAGCUGAAGAGAUUCGUGAUCGUGGGCCUGCUGAUCACCAUUGGCAUCUUGAGCUGGCACUUCUACGGUGAGUU_GUCUCUUUA_____AGC_UCUCUU_____ ..........(((((((((.....((((((((..((((..(((............)))...))))..))))))))......))))))))).................... (-18.23 = -18.73 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:21 2006