| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,727,303 – 11,727,394 |
| Length | 91 |
| Max. P | 0.864183 |
| Location | 11,727,303 – 11,727,394 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 73.00 |
| Mean single sequence MFE | -31.55 |
| Consensus MFE | -12.44 |
| Energy contribution | -12.62 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.864183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11727303 91 - 27905053 GUU--------CGACAGGUGUCGUCCCAUUUUGAAUUUGUUAUGAAAUGUGACAGCAAAUCGGGGGAGUGUCCAUAAGUGGGCUCUA--CGCCUGAUCGGA .((--------((((((((((..((((..((((....((((((.....)))))).))))...))))((.(((((....))))).)))--)))))).))))) ( -33.40) >DroPse_CAF1 71626 99 - 1 GUGGGCAUACCCUCCACUUUUAGUCCGCUUAGGCACGUGCCAUUAAAUACCCUGCCACAUAGGGACGGUCCCAAUAAGUUAAUGUUG--UGCCUGCACGGU (((((.......))))).......(((..((((((((...((((((...(((((.....)))))..(....)......)))))).))--))))))..))). ( -29.50) >DroSec_CAF1 64440 91 - 1 GUU--------CGACAGGUGUCUUCCCAUUUGGAAUUUGUUAUGAAAUGUGACAGCAAAUCGGCGGAGUGUCCAUAAGUGGGCACUA--CGCCUGAUCGGA .((--------((((((((((((.((.(((((....(((((((.....)))))))))))).)).))((((((((....)))))))))--)))))).))))) ( -34.90) >DroSim_CAF1 66535 93 - 1 GUU--------CGACAGGUGUCUUCCCAUUUGGAAUUUGUUAUGAAAUGUGACAGCAAAUCGGCGGAGUGUCCAUAAGUGGGCACUACACGCCUGAUCGGA .((--------((((((((((((.((.(((((....(((((((.....)))))))))))).)).))((((((((....))))))))..))))))).))))) ( -35.00) >DroEre_CAF1 64752 91 - 1 CUU--------CGACAGGUGCCGUGCCAUUUGGUAUUUGCUAUGAAAUGUGACACCAUAUCGGUGGACUGUCCAUAAGUGGGCUCCA--CGCCUGAUCGGA .((--------((((((((...(((((((((.(((.....))).))))).).))).......(((((..(((((....)))))))))--)))))).))))) ( -31.60) >DroYak_CAF1 68044 91 - 1 CUG--------GGACGGGUGCCGUGCUACUUGGUAUUUGCUAUGAAAUGAGAGACCAUAUCGGUGGAGUGUCCAUAAGUGGAAUCUA--CGCCUGAUCGGA (((--------(..(((((((.(((((....)))))..))..(((.(((......))).)))(((((...((((....)))).))))--)))))).)))). ( -24.90) >consensus GUU________CGACAGGUGUCGUCCCAUUUGGAAUUUGCUAUGAAAUGUGACACCAAAUCGGCGGAGUGUCCAUAAGUGGGCUCUA__CGCCUGAUCGGA ...........(((((((((...............((((((..((..((......))..))))))))..(((((....)))))......)))))).))).. (-12.44 = -12.62 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:20 2006