| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,721,138 – 11,721,249 |
| Length | 111 |
| Max. P | 0.500000 |
| Location | 11,721,138 – 11,721,249 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.18 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -16.04 |
| Energy contribution | -16.35 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11721138 111 - 27905053 CCCACUCG---CCACCCCCUUCGUCUUGUGAUGAUAAAAGCAAAUGAUUGCAAAACGGCAUUUGCC--CCUAGGGAAAAUAACGCAAAGUUCCUAACCCCCUAGUUGCGAAAUUAA .......(---((.......(((((....))))).....((((....)))).....))).(((((.--.((((((.....(((.....))).......))))))..)))))..... ( -26.70) >DroSec_CAF1 58390 113 - 1 CCCACUCG---CCACCCCCUUCGUCUUGUGAUGAUAAAAGCAAAUGAUUGCAAAACGGCAUUUGACCCCCAGGGGAAAAUAUCGCAAAGUUCCUAACCCCCUAGUUGCGAAAUUAA .......(---((.......(((((....))))).....((((....)))).....)))......(((....)))..(((.((((((.....(((......))))))))).))).. ( -24.90) >DroSim_CAF1 60147 113 - 1 CCCACUCG---CCAGCCCCUUCGUCUUGUGAUGAUAAAAGCAAAUGAUUGCAAAACGGCAUUUGCCCCCCAGGGGAAAAUAUCGCAAAGUUCCUAACCCCCUAGUUGCGAAAUUAA ........---....((((((((((....))))).....(((((((.(((.....)))))))))).....)))))..(((.((((((.....(((......))))))))).))).. ( -26.50) >DroEre_CAF1 58346 113 - 1 CGCACUCGCCGCCACCCCCUUCAUCUUGUGAUGAUAAAAGCAAAUGAUUGCAACACAGCAUUUGUCCC--CAGGGAAAAUAUUGCAAAGUCUCUAU-CCCCUAGUUGCGAAAUUAA .....((((.((........(((((....))))).....((((..((.(((......))).)).(((.--...))).....))))...........-......)).))))...... ( -21.00) >DroYak_CAF1 61866 99 - 1 --------------CCCCCUUCAUCUUGUGAUGAUAAAAGCAAAUGAUUGCAAAACACCAUCUGUCCC--CAGGGAAAAUAUCGCAAAGUUCCUAU-CCCCUAGUUGCGAAAUUAA --------------..(((((((((....))))).....((((....)))).................--.))))..(((.((((((.....(((.-....))))))))).))).. ( -18.70) >DroAna_CAF1 57732 102 - 1 ------CG-----UCCCCUUGCGCCUUAUGAUGAUAAAAGCAAAUGAUUGCAAAACAGCAUUUUGCCC--CAGGGCAAAUAUCGCAGAGUUCUUU-CCAUCUAUUUGCAAAAUUAA ------..-----.....(((((...((.((((......((((....))))......((..((((((.--...))))))....))..........-.))))))..)))))...... ( -20.40) >consensus CCCACUCG___CCACCCCCUUCGUCUUGUGAUGAUAAAAGCAAAUGAUUGCAAAACAGCAUUUGCCCC__CAGGGAAAAUAUCGCAAAGUUCCUAACCCCCUAGUUGCGAAAUUAA ................(((((((((....))))).....(((((((.(((.....))))))))))......))))..(((.((((((.................)))))).))).. (-16.04 = -16.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:19 2006