| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,712,648 – 11,712,745 |
| Length | 97 |
| Max. P | 0.831576 |
| Location | 11,712,648 – 11,712,745 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 79.66 |
| Mean single sequence MFE | -19.48 |
| Consensus MFE | -10.89 |
| Energy contribution | -12.39 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11712648 97 - 27905053 A-AAUCGAAUCAGCAUCGAAUCGAUUUCAAAUGAAAAUCUAUUUGGGAUUAUAAAAUCGCCGUGUUUAAUCCUUAAGCGCAUUUUCAUUUACAAAACA (-((((((.((......)).))))))).((((((((((......((((((....)))).))(((((((.....)))))))))))))))))........ ( -23.20) >DroSec_CAF1 49933 97 - 1 A-AAUCGAAUCAGCACCGAAUCGAUUUCAAAUGGAAAUCUAUUUGGGAUUAUGAAAUCGCCGUGUUUAAUCCUUAAGCGCAUUUUCAUUUACAAAACA (-((((((.((......)).))))))).((((((((((......((((((....)))).))(((((((.....)))))))))))))))))........ ( -22.70) >DroSim_CAF1 51599 97 - 1 A-AAUCGAAUCAGCACCGAAUCGAUUUCAAAUGGAAAUCUAUUUGGGAUUAUGAAAUCGCCGUGUUUAAUCCUUAAGCGCAUUUUCAUUUACAAAACA (-((((((.((......)).))))))).((((((((((......((((((....)))).))(((((((.....)))))))))))))))))........ ( -22.70) >DroEre_CAF1 49858 97 - 1 A-AAUCGAAUUAGUACAGAAUCGAUUUCAAAUGGAAAUCUAUUUGGGAUUAUGAAAACGCCAGAUUUAAUGCGUAAGCGCAUUUCCAUUUACACAACA (-((((((.((......)).))))))).(((((((((...((((((.............))))))....((((....)))))))))))))........ ( -20.92) >DroYak_CAF1 53255 98 - 1 AAAAUCGAAUUAGUACAGAAUCGAUUGCAAAUGGAAAUCUAUUUGGGAUUAUGAAAACGGCAAAUUUAAUCCGUAAGCGCAUUUCCAUUUACACAACA ..((((((.((......)).))))))(.((((((((((.(.((((((((((...............)))))).)))).).)))))))))).)...... ( -19.16) >DroAna_CAF1 49487 89 - 1 --AAUCAAAUUAGAAAACAAUAGAUAUGAAAUGGAAUCCCGG---UAAAUAUCCCAUCG----AUUCAAUCAGAAAAGUAAUUACCAUUUGGAAAAUA --..((((((......................((....))((---(((.(((....(((----((...))).))...))).)))))))))))...... ( -8.20) >consensus A_AAUCGAAUCAGCACAGAAUCGAUUUCAAAUGGAAAUCUAUUUGGGAUUAUGAAAUCGCCGUAUUUAAUCCGUAAGCGCAUUUCCAUUUACAAAACA ..((((((.((......)).))))))..((((((((((...((((((((((...............)))))).))))...))))))))))........ (-10.89 = -12.39 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:14 2006