Locus 4430

Sequence ID 3R_DroMel_CAF1
Location 11,692,823 – 11,692,916
Length 93
Max. P 0.588397
window7238

overview

Window 8

Location 11,692,823 – 11,692,916
Length 93
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 85.09
Mean single sequence MFE -26.10
Consensus MFE -19.83
Energy contribution -22.63
Covariance contribution 2.81
Combinations/Pair 1.08
Mean z-score -2.04
Structure conservation index 0.76
SVM decision value 0.11
SVM RNA-class probability 0.588397
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11692823 93 + 27905053
CAUGUUGCAUUCCAUAAGCCAGCAUAAGCUGGUAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGAGU
.((((.(((...(((..((((((....))))))..)))....)))))))..(.(((((..(((.....)))..))))))......--..----------...... ( -27.40)
>DroPse_CAF1 34008 95 + 1
----------GCCAUAAGCCACCAUAAACUGGCCAAUGUAAUUGCGCAUACGACUUGUUGUACAGCACUCAUGAUUUGCAAACACCGGUUCGUUCCCAUGUCGGU
----------.......(((..(((.(((..(((..(((..((((((.(((((....)))))..)).(....)....)))))))..)))..)))...)))..))) ( -17.30)
>DroSec_CAF1 29169 93 + 1
CAUGUUGCAUUCCAUAAGCCAGCGUAAGCUGGCAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGAGU
..((((((((..(((..((((((....))))))..((((......)))).....)))..)))))))).((((...))))......--..----------...... ( -32.10)
>DroSim_CAF1 31881 93 + 1
CAUGUUGCAUUCCAUAAGCCAGCGUAAGCUGGCAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGAGU
..((((((((..(((..((((((....))))))..((((......)))).....)))..)))))))).((((...))))......--..----------...... ( -32.10)
>DroEre_CAF1 29691 93 + 1
CAUGUUGCAUUCCAUAAGCCCGCAUAAGCUGGUAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGGGU
.((((.(((...(((..(((.((....)).)))..)))....)))))))..(.(((((..(((.....)))..))))))......--..----------...... ( -22.80)
>DroYak_CAF1 29873 93 + 1
CAUGCUGCAUUCCAUAAGCCCGCAUAAGCUGGUAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGAGU
..((((((((..(((..(((.((....)).)))..((((......)))).....)))..)))))))).((((...))))......--..----------...... ( -24.90)
>consensus
CAUGUUGCAUUCCAUAAGCCAGCAUAAGCUGGCAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA__GC__________UUGAGU
.((((.(((...(((..((((((....))))))..)))....)))))))..(.(((((..(((.....)))..)))))).......................... (-19.83 = -22.63 +   2.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:01 2006