| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,685,166 – 1,685,282 |
| Length | 116 |
| Max. P | 0.905533 |
| Location | 1,685,166 – 1,685,282 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.10 |
| Mean single sequence MFE | -28.35 |
| Consensus MFE | -19.45 |
| Energy contribution | -18.98 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1685166 116 - 27905053 UUUGCUUGA-AAAUUACCAAUUUGCUCCUCUUUUCCUUAAGGCCGCACCUCCUGCAUCUCCCACGAGACGCUUGGCUUCGAUGCACUGGGUAAUGUGGUCAACUACAAGUACAAUGA ..((((((.-((((.....)))).................((((((((((..((((((.....((((...)))).....))))))..))))...)))))).....))))))...... ( -27.50) >DroSec_CAF1 2792 103 - 1 -----------AAUGACCGAUUUGCUUCUCUU---CUUAAGGCCGCACUUCCUGCAUCUCCCACGAGACCCUUGGCUUCGAUGCACUGGGCAAUGUGGUCAACUACAAGUACAAUGA -----------..((((((..((((((.....---.(..((((((((.....))).((((....)))).....)))))..)......))))))..))))))................ ( -26.30) >DroSim_CAF1 2770 114 - 1 UUUGCUUGAUAAAUGACCAAUUUGCUUCUCUU---AUUAAGGCCGCACUUCCUGCAUCUCCCACGAGACCCUUGGCUUCGAUGCACUGGGCAAUGUGGUCAACUACAAGUACAAUGA ..((((((.((..((((((..((((((....(---((..((((((((.....))).((((....)))).....)))))..)))....))))))..))))))..))))))))...... ( -34.80) >DroEre_CAF1 2754 99 - 1 U-------AAAAAUG------UUC--UUCUUU---UUUAAGGCCGCACCUCCUGCAUCUCCCAUGAGACCCUCGGCUUCGAUGCACUGGGCAAUGUGGUCAACUACAAGUAUAAUGA .-------.......------...--......---.....((((((((((..((((((.....((((...)))).....))))))..)))...)))))))................. ( -23.90) >DroYak_CAF1 2699 114 - 1 UGUGCUUGAUAAAUGACCUAUUUCUUUUUUUU---CUUAAGGCCGCACCUCCUGCAUCUCACAUGAAACCCUCGGCUUUGAUGCACUGGGCAAUGUGGUCAACUACAAGUACAAUGA ((((((((......((......))........---.....((((((((((..((((((.....(((.....))).....))))))..)))...))))))).....)))))))).... ( -31.70) >DroMoj_CAF1 2873 101 - 1 AGC------------UCUAAUUGGAGUC-UCU---UUUCAGGUCGAACCUCCUGCAUUUCGCAUGAAACUUUAGGCUUCGAUGCCUUGGGCAAUGUGGUCAACUACAAGUACAAUGA .((------------((..(((((((((-(..---(((((((.....))...(((.....))))))))....)))))))))).....))))..(((((....))))).......... ( -25.90) >consensus U_U_____A_AAAUGACCAAUUUGCUUCUCUU___CUUAAGGCCGCACCUCCUGCAUCUCCCACGAGACCCUUGGCUUCGAUGCACUGGGCAAUGUGGUCAACUACAAGUACAAUGA ........................................((((((((((..((((((.....((((...)))).....))))))..)))...)))))))................. (-19.45 = -18.98 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:19 2006