| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,689,799 – 11,689,889 |
| Length | 90 |
| Max. P | 0.978040 |
| Location | 11,689,799 – 11,689,889 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 76.37 |
| Mean single sequence MFE | -22.70 |
| Consensus MFE | -14.54 |
| Energy contribution | -14.60 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.978040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11689799 90 - 27905053 AUAUAUCUAAGCGGGGGAGGGCUUUUUGCAUGGCAAAAGCUUGCAUUAUUUCCCAAAAAUAUUCCCAU-GGAAGGAUAAAAUCUAUAAAGC---- ...(((((......((((((......((((.(((....)))))))...)))))).......((((...-))))))))).............---- ( -19.00) >DroSec_CAF1 26291 82 - 1 ------------GGGGAAGAACUUUUUGCAUGGCGAAAGCUUGCAUUAUUUCCCAAAAAUAUUUCUAU-GGAAGGAUAAAAUCCAUGGAGCCAGG ------------((((((........((((.(((....)))))))...))))))........((((((-(((.........)))))))))..... ( -25.90) >DroSim_CAF1 29065 94 - 1 AUAUAUAUAAAGGGGACAGGACUUUUUGCAUGGCGAAAGCUUGCAUUAUUUCCCAAAAAUAUUUCUAU-GGAAGGAUAAAAUCCAUAGAGCCAGG ...........((.....(((..(..((((.(((....)))))))..)..))).........((((((-(((.........)))))))))))... ( -25.50) >DroEre_CAF1 26581 94 - 1 AUAUAUCUAACAAGG-GAAGCCUUUUUGUAUGGCGAAAGCUUGCAUUAUUUCCCAAACAUAUUUAUUUCAGGCGGAAAGUAUCCAUAGAUCCAGG ....(((((....((-((((......((((.(((....)))))))...))))))...................(((.....))).)))))..... ( -20.40) >consensus AUAUAUCUAA__GGGGGAGGACUUUUUGCAUGGCGAAAGCUUGCAUUAUUUCCCAAAAAUAUUUCUAU_GGAAGGAUAAAAUCCAUAGAGCCAGG .............((((((.......((((.(((....)))))))...))))))...................(((.....)))........... (-14.54 = -14.60 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:00 2006