| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,684,648 – 11,684,750 |
| Length | 102 |
| Max. P | 0.848139 |
| Location | 11,684,648 – 11,684,750 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 83.90 |
| Mean single sequence MFE | -45.65 |
| Consensus MFE | -36.47 |
| Energy contribution | -36.12 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11684648 102 + 27905053 GAUAGUCAAAGCCGCCGCCAUUCAGCUUGGGUGAACUGGAGCUGAUCUUGCGUUUCACGCGGAGAUUGGGCGAAUCC---UUGGACGGC---GACGGUGGCGGUGGCA ..........((((((((((((((((((.((....)).)))))))(((((((.....))).))))(..((......)---)..).((..---..))))))))))))). ( -46.30) >DroPse_CAF1 20978 104 + 1 GGUAGUCGAAGCUGCUGCCAUUCAGCUUGGGCGAGCUGGAGCUGAUCUUGCGCUUCACGCGGAGAUUGGGCGAGUUCUCUUUGGGCGGC---GGCAGUG-CAAUGACC ....((((..(((((((((.((((((((....)))))))).(..(((((.(((.....))))))))..)....((((.....)))))))---)))))).-...)))). ( -45.00) >DroSec_CAF1 21234 102 + 1 GGUAGUCAAAGCCGCCGCCAUUCAGCUUGGGUGAACUGGAGCUAAUCUUGCGUUUCACGCGGAGAUUGGGCGAGUCC---UUGGACGGC---GACGGUGGCGGUGGCA ..........((((((((((((((((((.((....)).)))))(((((((((.....))).))))))..((..(((.---...))).))---))..))))))))))). ( -47.80) >DroEre_CAF1 21331 102 + 1 GGUAGUCAAAGCUGCCGCCAUUCAGUUUGGGUGAACUGGAGCUGAUCUUGCGUUUUACGCGGAGAUUGGGCGAGUCC---UUGGACGGC---GACGGUGGCGGUGGCA ..........((..((((((((..(((..((.((.((.(..(..((((((((.....))).)))))..).).)))))---)..)))(..---..)))))))))..)). ( -44.80) >DroAna_CAF1 21569 105 + 1 GAUACUCGAAGCCACUGCCGUUUAGCUUGGGCGAGCUGGAGCUGAUCUUGCGCUUCACCCGAAGGUUGGGGGAGUCC---UUGGACAGGGAGGACGGUGGCGGUGGCA ..........(((((((((.((((((((....))))))))((((.((((..(((((.(((((...))))))))))((---((....))))))))))))))))))))). ( -46.70) >DroPer_CAF1 21184 104 + 1 GGUAGUCGAAGCUGCUGCCAUUCAACUUGAGCGAGCUGGAGCUGAUCUUGCGCUUCACGCGGAGAUUGGGCGAGUUCUCUUUGGGCGGC---GGCAGUG-CAAUGACC ....((((..(((((((((.((((....(((.(((((.(..(..(((((.(((.....))))))))..).).))))).))))))).)))---)))))).-...)))). ( -43.30) >consensus GGUAGUCAAAGCCGCCGCCAUUCAGCUUGGGCGAACUGGAGCUGAUCUUGCGCUUCACGCGGAGAUUGGGCGAGUCC___UUGGACGGC___GACGGUGGCGGUGGCA ....((((..(((((((((..(((((((.((....)).)))))))(((((((.....))).))))...)))..((((.....)))).........))))))..)))). (-36.47 = -36.12 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:59 2006