Locus 4426

Sequence ID 3R_DroMel_CAF1
Location 11,679,765 – 11,679,857
Length 92
Max. P 0.672178
window7233

overview

Window 3

Location 11,679,765 – 11,679,857
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 80.91
Mean single sequence MFE -24.82
Consensus MFE -17.58
Energy contribution -17.20
Covariance contribution -0.38
Combinations/Pair 1.36
Mean z-score -1.47
Structure conservation index 0.71
SVM decision value 0.29
SVM RNA-class probability 0.672178
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11679765 92 + 27905053
CAAAUCA--CAUGGAAUCAGGAAUAUCAGAAAC-----UACUCUGUAUGU----CACUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCUGCCCUGAAGUGG
.......--(((....((((((....((((...-----...))))....)----)......(((..((((((((......))))))))...))))))).))). ( -26.00)
>DroPse_CAF1 15898 93 + 1
CACAUCACACAUGGAUAUAGGAAUAACAAAAAAGUGCCUACUUAA----------AGCUACGGUUAACGCGCUCCACCAUGAGCGUGUCCUGCUCGAAAGUGG
.......(((.......((((....((......)).)))).((..----------(((...((...((((((((......)))))))))).)))..)).))). ( -21.80)
>DroSec_CAF1 16376 92 + 1
CAAAUCA--CAUGGAAUCAGGAAUAUCAGAAAC-----UACUCUGUAUGU----CACUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCUGCCCUGAAGUGG
.......--(((....((((((....((((...-----...))))....)----)......(((..((((((((......))))))))...))))))).))). ( -26.00)
>DroSim_CAF1 18952 92 + 1
CAAAUCA--CAUGGAAUCAGGAAUAUCAGAAAC-----UACUCUGUAUGU----CACUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCUGCCCUGAAGUGG
.......--(((....((((((....((((...-----...))))....)----)......(((..((((((((......))))))))...))))))).))). ( -26.00)
>DroYak_CAF1 16513 92 + 1
CAAAUCA--CAUGGAAUCAGGAAUAUCAGAAAC-----UACUUUGUAUGU----CUCUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCCGCCCUGAAGUGG
.....((--(.........(..((((((((...-----...)))).))))----..)(((.(((..((((((((......))))))))...))).))).))). ( -22.70)
>DroAna_CAF1 16777 96 + 1
UUAAUCA--CAUGGAAACAGGAAUAACAAAAAG-----UAUUUUGAGUGUGUCUGUCUUAGGGCUAACGCGCUCCUCCGUGAGCAUGUCCUGCCCUAAAAUGG
.....((--((((....)........(((((..-----..))))).))))).((((.(((((((..(((.((((......)))).)))...))))))).)))) ( -26.40)
>consensus
CAAAUCA__CAUGGAAUCAGGAAUAUCAGAAAC_____UACUCUGUAUGU____CACUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCUGCCCUGAAGUGG
.........(((....((((......((((...........))))................(((..((((((((......))))))))...))))))).))). (-17.58 = -17.20 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:56 2006