| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,671,061 – 11,671,171 |
| Length | 110 |
| Max. P | 0.768411 |
| Location | 11,671,061 – 11,671,171 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 85.47 |
| Mean single sequence MFE | -38.02 |
| Consensus MFE | -29.69 |
| Energy contribution | -29.67 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11671061 110 + 27905053 CAGACUGUCCACCUUGUCGGCGGAUAAGGCGGACACUAAGUGGUCCAGUCGAUUCGACCACAGCUCGAACCAGGCGGGCAUCUUAAAAAAUAUAAAGGUGAGUU--GAUUGG .....(((((.(((((((....))))))).))))).........(((((((((((.(((...(((((.......)))))...(((.......))).))))))))--)))))) ( -39.40) >DroVir_CAF1 11269 105 + 1 CAGGCUAUCCACCUUGUGGGCCGACAGGGCGGAUACCAGAUGAUCCAGACGCGUGGACCACAGCUCAAACCAGGCGGGCAUCUAAGAAAUCAU-----UGAUUAAU--CCGA ..((.(((((.((((((......)))))).)))))))(((((.(((....((.(((.............))).))))))))))..........-----........--.... ( -29.92) >DroSec_CAF1 7735 110 + 1 CAGACUGUCCACCUUGUCGGCGGAUAAGGCGGACACUAAGUGGUCCAGUCGAUUCGACCACAGCUCGAACCAGGCGGGCAUCUUAAGAAAUAUAAAGGUGAGUU--GAUUGG .....(((((.(((((((....))))))).))))).........(((((((((((.(((...(((((.......))))).((....))........))))))))--)))))) ( -41.50) >DroSim_CAF1 9816 110 + 1 CAGACUGUCCACCUUGUCGGCGGAUAAGGCGGACACUAAGUGGUCCAGUCGAUUCGACCACAGCUCGAACCAGGCGGGCAUCUUAAAAAAUAUAAAGGUGAGUU--GAUUGG .....(((((.(((((((....))))))).))))).........(((((((((((.(((...(((((.......)))))...(((.......))).))))))))--)))))) ( -39.40) >DroEre_CAF1 7815 108 + 1 CAGACUGUCCACUUUGUCGGCUGAUAAGGCGGACACUAAGUGGUCCAGUCGAUUCGACCACAGCUCGAACCAGGCGGGCAUCUUAAA-AAAAUAAAGGUGAGUU--GAAAA- ..(((((.((((((((((.(((.....))).))))..))))))..)))))..(((((((((.(((((.......)))))..(((...-......)))))).)))--)))..- ( -39.50) >DroYak_CAF1 7828 109 + 1 CAGGCUGUCCACCUUGUCGGCGGAUAAGGCGGACACUAAGUGGUCUAGUCGAUUCGACCACAGCUCGAACCAGGCGGGCAUCUUAAAGAAAAUAAAGGUGAGUU--UGAAA- ((((((((((.(((((((....))))))).))))(((..((((((..........)))))).(((((.......))))).................))).))))--))...- ( -38.40) >consensus CAGACUGUCCACCUUGUCGGCGGAUAAGGCGGACACUAAGUGGUCCAGUCGAUUCGACCACAGCUCGAACCAGGCGGGCAUCUUAAAAAAUAUAAAGGUGAGUU__GAUUGG .....(((((.(((((((....))))))).)))))....((((((..........)))))).(((((.......)))))................................. (-29.69 = -29.67 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:55 2006