Locus 4423

Sequence ID 3R_DroMel_CAF1
Location 11,660,799 – 11,660,908
Length 109
Max. P 0.986924
window7230

overview

Window 0

Location 11,660,799 – 11,660,908
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 77.08
Mean single sequence MFE -29.90
Consensus MFE -20.90
Energy contribution -22.26
Covariance contribution 1.36
Combinations/Pair 1.24
Mean z-score -2.26
Structure conservation index 0.70
SVM decision value 2.06
SVM RNA-class probability 0.986924
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11660799 109 + 27905053
GAAAUCAAGGUGAGGCCGUAAUCCGGGAUUCAGAACCAUUACCUGGUCACGUGAUGGUCAUAUUGAAUCCUUAUGCUACUUGCUACUUGAAUUCACAAACUAUGUUUUA
(((.((((((..((..((((....(((((((((.((((((((........))))))))....)))))))))))))...))..)..))))).)))............... ( -31.00)
>DroSec_CAF1 166 108 + 1
GAAAUCAAGGUGAGGCCGUAAGCCGGGAUUCAGGACCAUCACCGGGUCAUAUGAUGGUCAUAUUGAAUCCUUAUA-AAUGUGCUACUUGAAUUCACAAACUAUGGUUUA
(((.(((((....(((.....)))((((((((.((((((((..........))))))))....))))))))....-.........))))).)))..((((....)))). ( -33.20)
>DroSim_CAF1 166 108 + 1
GAAAUCAAGGUGAGGCCGUAAGCCGGGAUUCAGGACCAUUACCGGGUCACGCGAUGGUCGUAUUGAAUCCUUAUA-AAUGUCCUACUUGAAUUCACAAACUAUAAUUUA
(((.(((((...(((.(((.....((((((((((((((((..((.....)).)))))))...)))))))))....-.))).))).))))).)))............... ( -33.30)
>DroEre_CAF1 166 89 + 1
GAAAUCAAGGUGAGGCCGCAAGCCGGGAUUCGUGACUA--UA---GUGA-AUCCUGGUUAUAGUGAAUCCUUA--------------UAAAUUCAUCAACUCUGGGUUA
.........((((((.(((.((((((((((((......--..---.)))-)))))))))...)))...)))))--------------).((((((.......)))))). ( -24.20)
>DroYak_CAF1 166 106 + 1
GAAAUCAAGGUGAGGCCACAAACCGGGAUUCAGGACUA--ACCGGGUCACGUGCUGGUUAUAGUGAAUCCUUACA-AAUGAGCAAAAUAAACUCACCAACUCUGGGUUA
........((((((((((......((((((((..(.((--(((((........))))))))..))))))))....-..)).))........))))))............ ( -27.80)
>consensus
GAAAUCAAGGUGAGGCCGUAAGCCGGGAUUCAGGACCAU_ACCGGGUCACGUGAUGGUCAUAUUGAAUCCUUAUA_AAUGUGCUACUUGAAUUCACAAACUAUGGUUUA
.........(((((((.....)))((((((((((((((((((........)))))))))...))))))))).....................))))............. (-20.90 = -22.26 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:53 2006