Locus 4421

Sequence ID 3R_DroMel_CAF1
Location 11,653,777 – 11,653,897
Length 120
Max. P 0.841593
window7224

overview

Window 4

Location 11,653,777 – 11,653,897
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.03
Mean single sequence MFE -33.48
Consensus MFE -28.42
Energy contribution -29.43
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.85
SVM decision value 0.75
SVM RNA-class probability 0.841593
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11653777 120 - 27905053
ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUUGAUUUGAUGGAAUUGGAUCGAAUUUCGCUGUCUGACCGCCCAUUUCCAUUUUUAGCCAACGCCUAAGCCAAUAUAAGCGCU
.....((((..(((((...(((((((((((((((((((..((((....))))..)))))))))..((.(.....).)).))))))..))))..))))).))))..((........))... ( -31.90)
>DroSim_CAF1 36775 120 - 1
ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUUGAUUUGAUUGAAUUGGAUCGAAUUUCGCUGUCUGAACGCCCAUUUCCAUUUUUGGCCAACGCCUAAGCCAAUAUAAGCGCA
.....((((..((((((..(((.(((((((((((((((..((((....))))..)))))))))..((.((....)))).))))))..)))..)))))).))))..((........))... ( -36.60)
>DroEre_CAF1 32622 115 - 1
ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUU-----GAUUGAAUUGGAUCGAAUUUCACUGUUUGACCGCCCAUUUCCAUUUUUGGCCAACGCCUAAGCCAACACAUGCGCU
.....((((..((((((..(((.((((((((((((((..-----.))))))))((.((((((......))))))))...))))))..)))..)))))).)))).(((((.....)).))) ( -33.50)
>DroYak_CAF1 35338 115 - 1
ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUU-----GAUUGAAUUGGAUCGAAUUUCACUGUUUGACCGCCCAUUUCCAUUUUUGGCCAACGCCUAAGUCAACACAAGAGCU
.....((((..((((((..(((.((((((((((((((..-----.))))))))((.((((((......))))))))...))))))..)))..)))))).))))................. ( -31.90)
>consensus
ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUU_____GAUUGAAUUGGAUCGAAUUUCACUGUCUGACCGCCCAUUUCCAUUUUUGGCCAACGCCUAAGCCAACACAAGCGCU
.....((((..((((((..(((.(((((((((((((((......)))))))))((.((((((......))))))...))))))))..)))..)))))).))))................. (-28.42 = -29.43 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:47 2006