| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,653,631 – 11,653,737 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 11,653,631 – 11,653,737 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.22 |
| Mean single sequence MFE | -21.24 |
| Consensus MFE | -16.94 |
| Energy contribution | -17.18 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11653631 106 - 27905053 GCAUCAAUGGCAUCGCCACACCAUUCCCCAUCCC-------CAUCUCCCAUCUGCUGGCAGCACCCAUUGCCCCGCU-------AUCCGAUGUUUAAUCAGCGGAUUUUCCGGCUGUAAU (((((.(((((...((((((..............-------...........)).)))).(((.....)))...)))-------))..))))).....((((((.....)).)))).... ( -22.01) >DroSec_CAF1 34428 119 - 1 GCAUCAAUGGCAUCGCCACACCAUUCCACAUUCCCCAAUC-CAUCUCCCAUCUGCUGGCAGCACCCAUUGCCCCGCUAUCCGCUAUCCGAUGUUUAAUCAGCGGAUUUUCCGGCUGUAAU ........(((...)))(((((..................-............((.(((((......)))))..)).(((((((....(((.....)))))))))).....)).)))... ( -22.80) >DroSim_CAF1 36623 112 - 1 GCAUCAAUGGCAUCGCCACACCAUUCCCCAUUCCCCAAUC-CAUCUCCCAUCUGCUGGCAGCACCCAUUGCCCCGCU-------AUCCGAUGUUUAAUCAGCGGAUUUUCCGGCUGUAAU (((((.(((((...((((((....................-...........)).)))).(((.....)))...)))-------))..))))).....((((((.....)).)))).... ( -21.78) >DroEre_CAF1 32469 113 - 1 GCAUCAAUGGCAUCGCCACACCAUACACCAUACACCAUUCCCAUCUCUCAUCUGCUGCCAGCACCCAUUGCCCCGCU-------AUCCGAUGUUUAAUCAGCGGAUUUUCCGGCACUAAU .......((((...)))).....................................((((.(((.....))).(((((-------....(((.....)))))))).......))))..... ( -18.60) >DroYak_CAF1 35185 113 - 1 GCAUCAAUGGCAUCGCCACACCAUACCCCAUUCCCCAUUCCCAUCUCUCAUCUGCUGCCAACACCCAUUGCCCCGCU-------AUCCGAUGUUUAAUCAGCGGAUUUUCCGGCAGUAAU .......((((...))))..................................(((((((..((.....))..(((((-------....(((.....)))))))).......))))))).. ( -21.00) >consensus GCAUCAAUGGCAUCGCCACACCAUUCCCCAUUCCCCAAUC_CAUCUCCCAUCUGCUGGCAGCACCCAUUGCCCCGCU_______AUCCGAUGUUUAAUCAGCGGAUUUUCCGGCUGUAAU ((.....((((...))))...............................((((((((((((......)))))................(((.....))))))))))......))...... (-16.94 = -17.18 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:46 2006