| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,674,336 – 1,674,438 |
| Length | 102 |
| Max. P | 0.657766 |
| Location | 1,674,336 – 1,674,438 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 85.80 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -15.87 |
| Energy contribution | -15.77 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1674336 102 - 27905053 CUGUUUUGGAGCUAAGAGAGAAGGAGCUUUUAUCAAUAAAUAUAUAGAAUGACAAGUCAUUCUGAUGUAAAAAAUUA--CGAUCUGAGAAUAAAAUGCAAGAAA--- ((.(((((....))))).)).....(((((((((..........((((((((....)))))))).(((((....)))--))......).)))))).))......--- ( -17.10) >DroSec_CAF1 5234 105 - 1 UUGUUUCGGAGCUCGGAGAGAGGGAGCUUUUAUCAAAAAAU--AUAGAAUGACAAGUCAUGCUGAUGUGAAAAGUUGUUUGCUCUGAGAAUGAAAUGUAAGAAAACA ..((((((...(((((((..(((.((((((..(((....((--.(((.((((....)))).))))).))))))))).))).)))))))..))))))........... ( -26.30) >DroSim_CAF1 3707 103 - 1 UUGUUUCGGAGCUCAGAGAGAGGGAGCUUUUAUCAACAAAU--AUAGAAUGACAAGUCAUGCUGAUAUGAAAAGUUG--UGCUCUGAGAAUAAAAUGUAAGAAAACA ...(((((((((.(((.(((((....)))))..........--.(((.((((....)))).)))..........)))--.))))))))).................. ( -22.30) >consensus UUGUUUCGGAGCUCAGAGAGAGGGAGCUUUUAUCAAAAAAU__AUAGAAUGACAAGUCAUGCUGAUGUGAAAAGUUG__UGCUCUGAGAAUAAAAUGUAAGAAAACA ...(((((((((...((.(((((...))))).))..........(((.((((....)))).)))................))))))))).................. (-15.87 = -15.77 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:18 2006