Locus 4417

Sequence ID 3R_DroMel_CAF1
Location 11,651,261 – 11,651,381
Length 120
Max. P 0.995439
window7216

overview

Window 6

Location 11,651,261 – 11,651,381
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.97
Mean single sequence MFE -31.70
Consensus MFE -28.48
Energy contribution -28.72
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.97
Structure conservation index 0.90
SVM decision value 2.58
SVM RNA-class probability 0.995439
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11651261 120 + 27905053
CCCGAAAUGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGAAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUUUCCCUUUGCCUUUUUAUUUUAUUUUUCGGAAACCAACGCAUUUCU
.((((((.((((..(((((...(((((((((((((.........))))).))))(((....)))))))(((..........)))...))))).)))).))))))................ ( -29.10)
>DroSec_CAF1 32039 119 + 1
CCCGAAACGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGGAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUU-GCCUUUGCCUUUAUAUUUUAUUUUUCGGAAACCAACGCAUUUCU
.((((((.((((..(((((...((((((((((..(((((((.....))))..)))..)))).))))))(((....-.....))).)))))...)))).))))))................ ( -31.70)
>DroSim_CAF1 34239 119 + 1
CCCGAAACGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGGAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUU-GCCUUUGCCUUUUUAUUUUAUUUUUCGGAAACCAACGCAUUUCU
.((((((.((((..(((((...((((((((((..(((((((.....))))..)))..)))).))))))(((....-.....)))...))))).)))).))))))................ ( -31.60)
>DroEre_CAF1 30058 118 + 1
CCCGAAAUAUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGGAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUU-GCCGUUGCGUUU-UCUUUUAUUUUUCGGAAACCAACGCAUUUCU
...(((((..............((((((((((..(((((((.....))))..)))..)))).)))))).......-((.((((.((((-((...........))))))))))))))))). ( -33.10)
>DroYak_CAF1 32744 118 + 1
CCCGAAAUGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGAAGGGCCCAGCAUCGAACAUGUUCCAACGCAUUUU-GCCUGUGCGUUU-UCUUUUAUUUUUCGGUAACCAACGCAUUUCU
.((((((.((((..........(((.(((((((((..(....).))))).)))).))).......(((((((...-....))))))).-....)))).))))))................ ( -33.00)
>consensus
CCCGAAAUGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGGAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUU_GCCUUUGCCUUU_UAUUUUAUUUUUCGGAAACCAACGCAUUUCU
.((((((.((((..........((((((((((..(((((((.....))))..)))..)))).))))))(((..........))).........)))).))))))................ (-28.48 = -28.72 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:39 2006