Locus 441

Sequence ID 3R_DroMel_CAF1
Location 1,671,971 – 1,672,091
Length 120
Max. P 0.704472
window718

overview

Window 8

Location 1,671,971 – 1,672,091
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.58
Mean single sequence MFE -38.00
Consensus MFE -16.48
Energy contribution -16.84
Covariance contribution 0.36
Combinations/Pair 1.47
Mean z-score -1.88
Structure conservation index 0.43
SVM decision value 0.36
SVM RNA-class probability 0.704472
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1671971 120 + 27905053
UUCUUCUAUCCCAGCCUAGAUGCCUUGGGCUCCUACUAUGCCUUCUGGCUCUUCGCUGUCUGCAUGGUGGUGGCCUUCUUCUUCGUCCUCUUCGUGGUGAUGGAGACAAAGGGGCUUAGU
....((((........)))).(((((((((..(((((((((.....(((.....)))....)))))))))..))))...((((((((.((.....)).))))))))....)))))..... ( -39.60)
>DroGri_CAF1 1683 120 + 1
CGCUAUUAUCCGGCACUAGAUGCUCUCGGCUCAUAUUAUGCAUUUUGGCUUUUUGCCUUUUUCUGUGUGGUGGCCUUCUUCUUUGUCCUGUUUGUCGUCAUGGAAACGAAGGGGCUGAGU
...........((((.....))))((((((((.(((((((((....(((.....)))......))))))))).....((((....(((((........)).)))...)))))))))))). ( -31.10)
>DroEre_CAF1 1233 120 + 1
UUCUUUUAUCCCAGCCUAGAUGCUCUGGGCUCCUACUACGCCUUCUGGCUCUUCGCCGGCUGCAUGGUAGUGGCCUUCUUCUUCGUGCUCUUCAUUGUGAUGGAGACGAAGGGCCUCAGU
............(((((((.....))))))).((((((.((...(((((.....)))))..)).)))))).(((((((.(((((((((........)).))))))).))).))))..... ( -43.90)
>DroMoj_CAF1 1436 120 + 1
CGCUACUAUCCGGCACUUGAUGCACUUGGCUCCUACUAUGCAUUCUGGCUCUUCUCCGGAUUCUGCAUAGUAGCAUUUUUCUUUGUCAUGUUCAUCGUCGUAGAGACCAAGGGCUUGAGC
.(((.......))).((..(.((.(((((...((((((((((.(((((.......)))))...))))))))))......((((((..(((.....)))..))))))))))).)))..)). ( -37.60)
>DroAna_CAF1 1258 120 + 1
UACUUCUACCCCAGCUUGGAUGCUCUCGGCUCUUACUAUGCCUUCUGGCUAUUCGGCGGCUGCAUGAUUGUGGCCUUCUUCUUUGUCCUAUUUGUGGUGAUGGAGACGAAGGGUCUUAGC
..((...((((..(((.(((((((...(((.........)))....))).)))))))(((..((....))..)))(((.((((..(((((....))).))..)))).)))))))...)). ( -37.80)
>consensus
UGCUUCUAUCCCAGCCUAGAUGCUCUCGGCUCCUACUAUGCCUUCUGGCUCUUCGCCGGCUGCAUGGUAGUGGCCUUCUUCUUUGUCCUCUUCGUCGUGAUGGAGACGAAGGGCCUGAGU
........................((((((..(((((((((...(((((.....)))))..))...)))))))(((((.(((((((.............))))))).)))))).))))). (-16.48 = -16.84 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:17 2006