Locus 4404

Sequence ID 3R_DroMel_CAF1
Location 11,641,659 – 11,641,768
Length 109
Max. P 0.569011
window7191

overview

Window 1

Location 11,641,659 – 11,641,768
Length 109
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 94.06
Mean single sequence MFE -19.88
Consensus MFE -17.08
Energy contribution -17.45
Covariance contribution 0.37
Combinations/Pair 1.08
Mean z-score -1.54
Structure conservation index 0.86
SVM decision value 0.07
SVM RNA-class probability 0.569011
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11641659 109 + 27905053
AUUUUUGAACUGAAUUUACGUUCACAGUU-CUGCCUUCUGUCCUUUUUCUUGGCCUUCUUUUUCGGCCUUCUAAGGUGAUUGCAGUGACUUUCAAUUAACUUUUUGCCAG
....(((((.(((((....))))).((((-((((..((...((((......((((.........))))....)))).))..)))).)))))))))............... ( -23.00)
>DroSec_CAF1 22555 109 + 1
AUUUUUGAACUGAAUUUACUUUCACAGCU-CUGCCUUCUGGCCUCUUUCUUGGCCUUCUUUUUCGGUCUUCUUAGGUGAUUGCAGUGACUUUCAAUUAACUUUUUGCCAG
....((((((((...((((((....((..-(((......((((........))))........))).))....))))))...)))).....))))............... ( -17.94)
>DroSim_CAF1 24647 109 + 1
AUUUUUGAACUGAAUUUACGUUCACAGUU-CUGCCUUCUGUCCUCUUUCUUGGCCUUCUUUUUCGGCCUUCUUAGGUGAUUGCAGUGACUUUCAAUUAACUUUUUGCCAG
....(((((.(((((....))))).((((-((((..((...(((.......((((.........)))).....))).))..)))).)))))))))............... ( -21.20)
>DroYak_CAF1 23070 109 + 1
AUUUUUAAACUGAAUUUACGUUCACAGUUGCCGCCUUCUGUCCUCUUUCUUGGCCUUCUUUUUCGGCUUUCUUAGGUGAUUGCAGUGACUUUCAAUUAAUUUUUU-CAAG
..........(((((....))))).(((..(.((..((...(((.......((((.........)))).....))).))..)).)..)))...............-.... ( -17.40)
>consensus
AUUUUUGAACUGAAUUUACGUUCACAGUU_CUGCCUUCUGUCCUCUUUCUUGGCCUUCUUUUUCGGCCUUCUUAGGUGAUUGCAGUGACUUUCAAUUAACUUUUUGCCAG
....(((((.((((......)))).((((.((((..((...(((.......((((.........)))).....))).))..)))).)))))))))............... (-17.08 = -17.45 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:15 2006