| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,640,188 – 11,640,290 |
| Length | 102 |
| Max. P | 0.564827 |
| Location | 11,640,188 – 11,640,290 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 91.56 |
| Mean single sequence MFE | -26.62 |
| Consensus MFE | -20.17 |
| Energy contribution | -20.17 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564827 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11640188 102 + 27905053 UGGUUCCAUUUACUCAAUUGUGGGUGAGUCACAAAAGGUGCGAUAUGUGGGCAGCGACUUUGUUUUAUGUGUUG--UGGA-----ACAUAAAAUAGAACAGCAUAAAUC ..((((((((((((((....)))))))(.(((.....))))...))).)))).((...((((((((((((....--....-----))))))))))))...))....... ( -24.30) >DroSec_CAF1 21119 104 + 1 UGGUUCCAUUUACUCAAUUGUGGGUGAGUCACGAAAGGUGCGAUAUGUGGGGAGCGACUUUGUUUUAUGUGUUGUGUGGA-----ACAUAAAAUAGAAAAGCAUAAAUC ...(((((((((((((....)))))))((..(....)..)).....)))))).((...((((((((((((..........-----))))))))))))...))....... ( -25.40) >DroSim_CAF1 18415 104 + 1 UGGUUCCAUUUACUCAAUUGUGGGUGAGUCACAAAAGGUGCGAUAUGUGGGGAGCGACUUUGUUUUAUGUGUUGUGUGGA-----ACAUAAAAUAGAAAAGCAUAAGUC ..((((((((((((((....)))))))))((((............)))).)))))(((((((((((.(((.(((((....-----.))))).)))..)))))).))))) ( -27.70) >DroEre_CAF1 19025 107 + 1 UGGUUCCAUUUACUCAAUUGUGGGUAAGUCGCAAAAGGUGUGAUAUGUGGGGAGCGACUUUGUUUUAUGGGUUG--UGGGACAUAACAUAAAAUAGAAACGCGUAAAUC ...(((((((((((((....)))))))((((((.....))))))..)))))).(((..(((((((((((...((--.....))...)))))))))))..)))....... ( -29.50) >DroYak_CAF1 21636 102 + 1 UGGUUCCAUUUACUCAAUUGUGGCUGAGUCGCCAAAGGUGUGAUAUGUGGGGAGCGACUUUGUUUUAUGGGUUG--UGGA-----ACAUAAAAUAGAAAAGCAUAAAUC ..(((((((..(((((..((..((.((((((((..(.(((...))).)...).))))))).))..))))))).)--))))-----))...................... ( -26.20) >consensus UGGUUCCAUUUACUCAAUUGUGGGUGAGUCACAAAAGGUGCGAUAUGUGGGGAGCGACUUUGUUUUAUGUGUUG__UGGA_____ACAUAAAAUAGAAAAGCAUAAAUC ..((((((((((((((....)))))))))(((.....)))..........)))))...(((((((((((.................)))))))))))............ (-20.17 = -20.17 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:14 2006