Locus 44

Sequence ID 3R_DroMel_CAF1
Location 302,675 – 302,795
Length 120
Max. P 0.905634
window70

overview

Window 0

Location 302,675 – 302,795
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 73.40
Mean single sequence MFE -37.84
Consensus MFE -13.96
Energy contribution -16.32
Covariance contribution 2.36
Combinations/Pair 1.04
Mean z-score -2.01
Structure conservation index 0.37
SVM decision value 1.04
SVM RNA-class probability 0.905634
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 302675 120 + 27905053
CUCUGACGAUGCUGUCACUGUCCAUCGAAUGAUUAUGCCCACGAUGUGUUAACCCCGAAUGGUACGAAGAUCGUGGCCAAGCAUCUCAGUCUCAGACGAGAGUCUCAGGGGCCAGAGAAC
(((((..((((((((((...((....)).))))..((.(((((((.(....(((......)))....).))))))).))))))))...(((((((((....))))..))))))))))... ( -40.60)
>DroSec_CAF1 37943 95 + 1
CUCUGACGAUGCUGUCACUGUCCAUCGCA---------------UGUGGAAACCCCGAAUGGUGCUGGGAUCGUGGCCAAGCAUCUCAGUCUCAGACGAG----------ACCAGAGAAC
(((((..(((((((((((.((((...(((---------------(.(((.....)))....))))..)))).)))))..))))))...(((((....)))----------)))))))... ( -38.90)
>DroSim_CAF1 39663 95 + 1
CUCUGACGAUGCUGUCACUGUCCAUCGCA---------------UGUGGAAACCCCGAAUGGUGCUGGGAUCGUGGCCAAGCAUCUCAGUCUCAGACGAG----------GCCAGAGAAC
(((((..(((((((((((.((((...(((---------------(.(((.....)))....))))..)))).)))))..))))))...(((((....)))----------)))))))... ( -38.30)
>DroEre_CAF1 42146 114 + 1
CUCUGAUGAUGCUGUCACUGUCCAUCGAAUGCUUGUGCCCAUGAUGUGAAAACAUCGAAUGGUACGGAGAUCGUGUCCAACCUUCACA------GACGAGAGUCUCAGGGGUCUGAGAAC
(((.((((((((.(((.(((((((((....((....))....(((((....)))))).)))).)))).))).)))))...((((...(------(((....)))).))))))).)))... ( -37.30)
>DroYak_CAF1 42149 114 + 1
CUGUGAUGAUGCUGUCACUGUCCAUCUAAUGCUUGUGUCCACAAUAUGGAAACAUCAAAUGGUACGGAGAUCGUGUCCCAGCAUCAGA------GACGAGAGUCUCAGGGGCCUGAGAAC
..(((((......)))))((((..(((.(((((.(((.(((....(((....)))....))))))((.(((...)))))))))).)))------))))....((((((....)))))).. ( -34.10)
>consensus
CUCUGACGAUGCUGUCACUGUCCAUCGAAUG_UU_UG_CCA__AUGUGGAAACCCCGAAUGGUACGGAGAUCGUGGCCAAGCAUCUCAGUCUCAGACGAGAGUCUCAGGGGCCAGAGAAC
(((((..(((((((((((.(((.........................(....).((....))......))).)))))..)))))).........(((....)))........)))))... (-13.96 = -16.32 +   2.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:11 2006