Locus 4399

Sequence ID 3R_DroMel_CAF1
Location 11,630,853 – 11,630,953
Length 100
Max. P 0.623939
window7184

overview

Window 4

Location 11,630,853 – 11,630,953
Length 100
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -14.10
Consensus MFE -10.08
Energy contribution -9.84
Covariance contribution -0.24
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.71
SVM decision value 0.18
SVM RNA-class probability 0.623939
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11630853 100 + 27905053
UCAAUUUAAAUUGAUUUUUUCAUUGUUG--CGGCGUCCGUUUCACUUUUUCUCGCCCAACGGCCGCUUGCCAUCCUGCUCUUUCUAUCCCCAUCCC------CUUCCC
(((((....)))))..........((((--.((((.................))))))))(((.....))).........................------...... ( -15.13)
>DroSec_CAF1 12060 90 + 1
UCAAUUUAAAUUGAUUUUUUCAUUGUUGCGCGGCGUCCGUUUCACUUUUUCUCGCCCAACGGCCGCUUGCCAUCCUGCUCUUACUCUC------------------CC
(((((....)))))............((.((((((.(((((...(........)...))))).))).)))))................------------------.. ( -13.60)
>DroSim_CAF1 9366 90 + 1
UCAAUUUAAAUUGAUUUUUUCAUUGUUGCGCGGCGUCCGUUUCACUUUUUCUCGCCCAACGGCCGCUUGCCAUCCUGCUCUUACUCUC------------------CC
(((((....)))))............((.((((((.(((((...(........)...))))).))).)))))................------------------.. ( -13.60)
>DroEre_CAF1 9593 105 + 1
UCAAUUUAAAUUGAUUUUUUCAUUGUUG--CGGUGUCCGUUUCACUU-UUCUCGCUCAACGGGCGCUUACUACUCUACUCUUUUUAUCCCCAUUCCCAUCGCCAUCCC
(((((....)))))..........((..--.((((((((((......-.........)))))))))).))...................................... ( -13.26)
>DroYak_CAF1 12187 105 + 1
UCAAUUUAAAUUGAUUUUUUCAUUGUUG--CGGUGUCCGUUUCACUU-UUCUCGCGCAACGGGCGCUUACUAUUCUACUCUUUUUAUCCCCAUUCCCAUCCUCAUCCC
(((((....)))))..........((..--.((((((((((.(.(..-.....).).)))))))))).))...................................... ( -14.90)
>consensus
UCAAUUUAAAUUGAUUUUUUCAUUGUUG__CGGCGUCCGUUUCACUUUUUCUCGCCCAACGGCCGCUUGCCAUCCUGCUCUUUCUAUCCCCAU_CC______C_UCCC
(((((....))))).................((((.(((((...(........)...))))).))))......................................... (-10.08 =  -9.84 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:08 2006