| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,630,502 – 11,630,601 |
| Length | 99 |
| Max. P | 0.985537 |
| Location | 11,630,502 – 11,630,601 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 92.78 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -25.26 |
| Energy contribution | -25.54 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.77 |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.985537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11630502 99 - 27905053 GACAGCAAGUUUGUAGCACUUUGUCUGCUCCGAUUCCUGCGCUGGUUUUAUUUAUAAC-CAAUCGCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA ....((.........))..((((((((..(((((((.((((((((((........)))-)..((((...))))....)))))))))))))..)))))))) ( -34.80) >DroSec_CAF1 11715 100 - 1 GCUUGCUAGUUUGUAGCACUUUGUCUGCUCCGAUUCCUGCGCUGGUUUUAUUUAUAACCCAAUCGCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA ...(((((.....))))).((((((((..(((((((.((((((((((........))))...((((...))))....)))))))))))))..)))))))) ( -37.20) >DroSim_CAF1 9020 100 - 1 GCCUGCUAGUUUGUAGCACUUUGUCUGCUCCGAUUCCUGCGCUGGUUUUAUUUAUAACCCAAUCGCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA .(((((((.....)))))....(((((..(((((((.((((((((((........))))...((((...))))....)))))))))))))..))))))). ( -37.50) >DroEre_CAF1 9212 99 - 1 GUUUGCAAUUUUGUAACACUUUGUCUGCUCCGAUUCGCAUGCUGGUUUUAUUUAUAAC-CAAUCCCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA .........(((((...(((...(((((.((((((((((((.(((((........)))-))....)).))))))))).).)))))...)))....))))) ( -30.10) >DroYak_CAF1 11792 99 - 1 GUUUGCAAUUUUGUAACACUUUGUCUGCUCCGAUUCCUAUGCUGCUUUUAUUUAUAAC-CAAUCCCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA (((((((....))))).))((((((((..(((((((...(((.((((..(((..(((.-........)))..))).))))))))))))))..)))))))) ( -23.40) >consensus GCUUGCAAGUUUGUAGCACUUUGUCUGCUCCGAUUCCUGCGCUGGUUUUAUUUAUAAC_CAAUCGCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA (.((((......)))))..((((((((..(((((((.(((((((((((.......................))))).)))))))))))))..)))))))) (-25.26 = -25.54 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:07 2006