| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,609,689 – 11,609,785 |
| Length | 96 |
| Max. P | 0.553237 |
| Location | 11,609,689 – 11,609,785 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 87.48 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -16.89 |
| Energy contribution | -17.13 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11609689 96 + 27905053 AGUGCAAACAGUCCCUUCCCCAUCGUCCCUGCCACAUGGGCACAU-----CAUAUGGGGUAACUUCAAACGUAAAUCGAAUGAAAGGCCCAAAGUGAAAGC .((((...(((.................)))((....)))))).(-----(((...((((...((((..((.....))..))))..))))...)))).... ( -19.73) >DroSec_CAF1 139553 96 + 1 AGUGCAAACAGUCCCAUCCCCAUCCCAUGUGGAACAUGGGCACAU-----CAUAUGGGGUAACUUCAAACGUAAAUCGAAUGAAAGGCCCAAAGUGAAAGC .((((...((.((((((.........))).)))...)).)))).(-----(((...((((...((((..((.....))..))))..))))...)))).... ( -24.40) >DroSim_CAF1 147689 96 + 1 AGUGCAAACAGUCCCAUCCCCAUUCCAUGUGGAACAUGGGCACAU-----CAUAUGGGGUAACUUCAAACGUAAAUCGAAUGAAAGGCCCAAAGUGAAAGC ...((.....(((((((..((((.....))))...))))).)).(-----(((...((((...((((..((.....))..))))..))))...))))..)) ( -25.20) >DroEre_CAF1 148491 91 + 1 AGUGC-----GUCCCUGCCCC-----AUGUGGCACAUGGGCACAUGGGCACAUAUGGGGUAACUUCAAACGUAAAUCGAAUGAAAGGCCCAAAGUGAAAGC ..((.-----(((..((((((-----(((((((.((((....)))).)).)))))))))))..((((..((.....))..)))).))).)).......... ( -30.60) >consensus AGUGCAAACAGUCCCAUCCCCAUCCCAUGUGGAACAUGGGCACAU_____CAUAUGGGGUAACUUCAAACGUAAAUCGAAUGAAAGGCCCAAAGUGAAAGC .((((.....((.((...............)).))....)))).......(((...((((...((((..((.....))..))))..))))...)))..... (-16.89 = -17.13 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:58 2006