| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,608,982 – 11,609,075 |
| Length | 93 |
| Max. P | 0.907602 |
| Location | 11,608,982 – 11,609,075 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 86.59 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -19.59 |
| Energy contribution | -19.40 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.907602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11608982 93 + 27905053 -CAAAGUGUAUAUAUACAUAUAUAUGUACAUGUG---GUACGUACAGUGUGCGACAUAACGAGCUGGUUGCAGCGAUGCGGAAACGCAUUUUAGUGU -....(((((((((((....)))))))))))((.---(((((.....))))).)).......((((....))))((((((....))))))....... ( -31.30) >DroSec_CAF1 138853 87 + 1 -CAAAGUGUGUAUA------GAUAUGUGCAUGUG---GUACGUACAGUGUGCGACAUAACGAGCUAGUUGCAACGAAGCGGAAACGCAUUUUAGUGA -.(((((((((.((------(...(((..((((.---(((((.....))))).)))).)))..))).((((......))))..)))))))))..... ( -22.20) >DroSim_CAF1 146995 87 + 1 -CAAAGUGUGUAUA------GAUAUGUGCAUGUG---GUACGUACAGUGUGCGACAUAACGAGCUGGUUGCAGCGAAGCGGAAACGCAUUUUAGUGA -....(((((((((------..(((((((.....---)))))))...))))).)))).....((((....))))...(((....))).......... ( -25.10) >DroYak_CAF1 140377 87 + 1 ACAAAGUGUGUA----------UAUGUGCAUGUAGCUGUACGUACAGUGUGCGACAUAACGACCUGGUUGCAGUGAAGCGGAAACGCACUUUAGUGA (((((((((((.----------(((((((((...(((((....))))))))).))))).((.((((....))).)...))...))))))))).)).. ( -25.10) >consensus _CAAAGUGUGUAUA______GAUAUGUGCAUGUG___GUACGUACAGUGUGCGACAUAACGAGCUGGUUGCAGCGAAGCGGAAACGCAUUUUAGUGA ......................(((((((........)))))))((.((((((((...........)))))).....(((....)))....)).)). (-19.59 = -19.40 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:57 2006