Locus 4386

Sequence ID 3R_DroMel_CAF1
Location 11,598,632 – 11,598,744
Length 112
Max. P 0.663643
window7166

overview

Window 6

Location 11,598,632 – 11,598,744
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 88.74
Mean single sequence MFE -22.36
Consensus MFE -18.44
Energy contribution -18.44
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.82
SVM decision value 0.27
SVM RNA-class probability 0.663643
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11598632 112 - 27905053
CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGGUGCACUUAGAAAAAUUAGAAUUUAAUUUUUUGCU
.......(((((((((........)))....(((..(((((((.....)))))))..))).((((.......))))))))))....((((((((((...))))))))))... ( -27.50)
>DroSec_CAF1 128314 112 - 1
CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGGUACACUUAGAAAAACUAGAAUUUAUUCUUUUGCU
........(((..........(((.(((...(((..(((((((.....)))))))..))).(((...)))...))).)))...((((.....))))............))). ( -20.50)
>DroSim_CAF1 132833 112 - 1
CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGGUGCACUUAGAAAAACUACAAUUAUUUCUUUUGCU
.......(((((((((........)))....(((..(((((((.....)))))))..))).((((.......)))))))))).............................. ( -24.40)
>DroEre_CAF1 130418 98 - 1
CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGCCACACUUAGAAAAACAAAAA--------------
................(((....(((((...(((..(((((((.....)))))))..))).((((.......))))))).))....))).........-------------- ( -19.20)
>DroYak_CAF1 129650 111 - 1
CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGUCGGCACACUUAGAGAAACUCAACUUCAUACUUUUCC-
.....................((((((((((.((..(((((((.....)))))))..)))))))..((((......))))......(((...)))....))))).......- ( -20.20)
>consensus
CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGGUACACUUAGAAAAACUAAAAUUUAUUCUUUUGCU
...((((.(((...((........))(((((.((..(((((((.....)))))))..)))))))..))).))))...................................... (-18.44 = -18.44 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:50 2006