Locus 4383

Sequence ID 3R_DroMel_CAF1
Location 11,585,611 – 11,585,719
Length 108
Max. P 0.678221
window7162

overview

Window 2

Location 11,585,611 – 11,585,719
Length 108
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 88.92
Mean single sequence MFE -22.33
Consensus MFE -18.47
Energy contribution -18.27
Covariance contribution -0.19
Combinations/Pair 1.10
Mean z-score -1.97
Structure conservation index 0.83
SVM decision value 0.30
SVM RNA-class probability 0.678221
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11585611 108 + 27905053
UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAGAGGAAUGCCAAAGCUUAGAUUUGUCUUUUAUUUUGGGUUCUU----------CAUUUUUUCUUUUGUU
...................(((((.(((((((...(((((....)))))(((((((.((((((...(((....)))....))))))))))))----------)..))))))).))))) ( -24.10)
>DroPse_CAF1 127338 102 + 1
UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAAAGGAAUGCCAGAGCUUAGAUUUGUCUUUUAUUUU----UCUA----------CCG--UUUCUUUUUUU
.(((((...((((....(((((..(((.....((((((((....)))))))).....)))........)))))....))))..)----))))----------...--........... ( -19.60)
>DroSec_CAF1 115599 106 + 1
UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAGAGGAAUGCCAAAGCUUAGAUUUGUCUGUUAUUUUGGGUUCUU----------C-UUUUUUC-UUUGUU
...................(((((.(((((((...(((((....)))))(((((((.((((((..((((....))))...))))))))))))----------)-)))))))-.))))) ( -23.80)
>DroYak_CAF1 116646 117 + 1
UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAGAGGAAUGCCAAAGCUUAGAUUUGUCUCUUAUUUUGGGUUCUUCUUUUUUUUUCAUUUUUCC-UUUGUU
...................(((((.(((((((...(((((....)))))(((((((.((((((...(((......)))..)))))))))))))...........)))))))-.))))) ( -25.80)
>DroAna_CAF1 201663 107 + 1
UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAAAGGAAUGCCAAAGCUUAGAUUUGUCUUUUAUUUGCUGUUCUU----------CAUUUUUUC-UUUGUU
...................(((((.(((((((((((((((....))))))))((((..((((....(((....)))....))))..))))..----------..)))))))-.))))) ( -21.10)
>DroPer_CAF1 128623 102 + 1
UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAAAGGAAUGCCAGAGCUUAGAUUUGUCUUUUAUUUU----UCUA----------CCG--UUUCUUUUUUU
.(((((...((((....(((((..(((.....((((((((....)))))))).....)))........)))))....))))..)----))))----------...--........... ( -19.60)
>consensus
UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAAAGGAAUGCCAAAGCUUAGAUUUGUCUUUUAUUUUGGGUUCUU__________CAUUUUUUC_UUUGUU
..((((.(...(((((........(((.....((((((((....)))))))).....)))......))))).).))))........................................ (-18.47 = -18.27 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:46 2006