Locus 4380

Sequence ID 3R_DroMel_CAF1
Location 11,574,244 – 11,574,337
Length 93
Max. P 0.507337
window7156

overview

Window 6

Location 11,574,244 – 11,574,337
Length 93
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 91.41
Mean single sequence MFE -20.09
Consensus MFE -16.60
Energy contribution -16.52
Covariance contribution -0.08
Combinations/Pair 1.18
Mean z-score -1.75
Structure conservation index 0.83
SVM decision value -0.05
SVM RNA-class probability 0.507337
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11574244 93 + 27905053
CUUUUCCCGCUUGACCU----GUUGGCAAUUUCAGCUCUGUAGUGAAAGCCAUAAAAUCGUGAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG
.................----((((((((((..........(((....((((.................))))..-)))........)))))))))). ( -19.00)
>DroSec_CAF1 103318 93 + 1
CUUUUCCCGCUUGACCU----GUUGGCAAUUUCACCUCUGUAGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG
.................----((((((((((((((.......))))))((((.................))))..-.............)))))))). ( -20.43)
>DroSim_CAF1 107270 93 + 1
CUUUUCCCGCUUGACCU----GUUGGCAAUUCCACCUCUGUAGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG
.................----((((((((((.(((.......)))...((((.................))))..-...........)))))))))). ( -18.43)
>DroEre_CAF1 106516 93 + 1
CUUUUCCCGCUUGACCU----GUUGGCAAUUUCACCUCCCUGGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG
.................----(((((((((((((((.....)))))))((((.................))))..-.............)))))))). ( -25.03)
>DroYak_CAF1 104320 93 + 1
CUUUUCCCGCUUGACCU----GUUGGCAAUUUCACCUCUGCAGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG
.................----((((((((((((((.......))))))((((.................))))..-.............)))))))). ( -20.43)
>DroAna_CAF1 190452 98 + 1
CGUUUCCCGCUCGACUUCCCACUUGGUAAUUUCUUCUUUUGAGUGAAAGUCAUAAAAUCGUAAUAAAAUCGGCCAAACUUUUAAUUUAAUUGCCAGCG
.......((((.(((((..((((..(............)..)))).)))))........(((((.((((..(........)..)))).))))).)))) ( -17.20)
>consensus
CUUUUCCCGCUUGACCU____GUUGGCAAUUUCACCUCUGUAGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA_ACUUUUAUUUUAAUUGCCAGCG
.....................((((((((((..........(((....((((.................))))...)))........)))))))))). (-16.60 = -16.52 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:40 2006