Locus 4374

Sequence ID 3R_DroMel_CAF1
Location 11,547,037 – 11,547,128
Length 91
Max. P 0.566262
window7148

overview

Window 8

Location 11,547,037 – 11,547,128
Length 91
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 84.85
Mean single sequence MFE -22.19
Consensus MFE -17.33
Energy contribution -17.50
Covariance contribution 0.17
Combinations/Pair 1.19
Mean z-score -1.78
Structure conservation index 0.78
SVM decision value 0.07
SVM RNA-class probability 0.566262
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11547037 91 + 27905053
--U-UGUGUCGCCUC---------AAUGGUAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAAAA----------
--.-..((((((...---------.((((((........)))))).........))))))...((((((((((.((((.......).))).))))))))))..---------- ( -19.92)
>DroSec_CAF1 80824 92 + 1
--U-UGUGUCGCCUC---------AAUGGCAUUUCUCCUUGCCAUCAGCUUCAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAAAAA---------
--.-..((((((...---------.((((((........)))))).........))))))...((((((((((.((((.......).))).))))))))))...--------- ( -21.92)
>DroSim_CAF1 83528 93 + 1
--U-UGUGUCGCCUC---------AAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAAAAAA--------
--.-..((((((...---------.((((((........)))))).........))))))...((((((((((.((((.......).))).))))))))))....-------- ( -21.92)
>DroEre_CAF1 83575 103 + 1
ACUAUAUGUCGCUUC---------AAUGGCAUUUCUCCUGGCCAUCAGCUUUAAGCGGCAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAGCAAGAGGCAGG-
......((((((((.---------.(((((..........))))).......))))))))....(((((((((.((((.......).))).)))))))))((.....))...- ( -21.50)
>DroYak_CAF1 80519 102 + 1
ACU-UAUGUCGCCUC---------AAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGAUAAAAAGAGGCAGC-
...-......(((((---------.((((((........))))))..((.....)).......((((((((((.((((.......).))).))))))))))...)))))...- ( -24.40)
>DroAna_CAF1 166970 110 + 1
-CU-UAUGCCCCCUCAUACCACCCAAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUUAUUUAGCGAUAAUUUAUGGACCAAACG-GGCAGCU
-..-..(((((..((..........((((((........))))))..((.....)))).......((((((((..((((((....)))))))))))))).....)-))))... ( -23.50)
>consensus
__U_UAUGUCGCCUC_________AAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAAAAAG________
......((((((.............((((((........)))))).........))))))...((((((((((.((((.......)).)).))))))))))............ (-17.33 = -17.50 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:32 2006