Locus 4373

Sequence ID 3R_DroMel_CAF1
Location 11,546,850 – 11,546,942
Length 92
Max. P 0.522168
window7147

overview

Window 7

Location 11,546,850 – 11,546,942
Length 92
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 92.30
Mean single sequence MFE -23.50
Consensus MFE -19.02
Energy contribution -18.55
Covariance contribution -0.47
Combinations/Pair 1.17
Mean z-score -2.02
Structure conservation index 0.81
SVM decision value -0.02
SVM RNA-class probability 0.522168
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11546850 92 + 27905053
AACCCCCGGUGCAAAGCUGUAAAUGUGCGGGUAUUUGCACAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUACA--CAC
........(((((((.(((((....)))))...)))))))((((((...((((((((...))))))))....))))))...........--... ( -24.10)
>DroSec_CAF1 80637 92 + 1
AACUCCCGGUGCAAAGCUGUAAAUGUGCGGGUAUUUGCAGAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA--CAC
.......((.(((((.(((((....)))))...)))))((((((((...((((((((...))))))))....))))))))......)).--... ( -23.70)
>DroSim_CAF1 83341 92 + 1
AACUCCCGGUGCAAAGCUGUAAAUGUGCGGGUAUUUGCAGAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA--CAC
.......((.(((((.(((((....)))))...)))))((((((((...((((((((...))))))))....))))))))......)).--... ( -23.70)
>DroEre_CAF1 83395 91 + 1
AACC-CCGAUUCAAAGCUGUAAAUGUGCGGGUAUUUACAGGACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA--CAC
....-...................(((.(((((..((..(((((((...((((((((...))))))))....)))))))))..))))).--))) ( -21.50)
>DroYak_CAF1 80338 92 + 1
AGCCCCCGAUUCAAAGCUGUAAAUGUGCGGGUAUUUGCAGAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA--CAC
........................(((.(((((..((..(((((((...((((((((...))))))))....)))))))))..))))).--))) ( -21.60)
>DroAna_CAF1 166790 94 + 1
GACCGCAGGUUGUGAGCUGUAAAUGUGCGGGUAUUUACAGAACGCACGCUGACCAUAAUAUAUGGUUGAAUCUGUGUUUUAUUUAUCCACACAC
...(((((((((((..(((((((((......)))))))))..))).....(((((((...))))))).)))))))).................. ( -26.40)
>consensus
AACCCCCGGUGCAAAGCUGUAAAUGUGCGGGUAUUUGCAGAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA__CAC
................(((((((((......)))))))))((((((...((((((((...))))))))....))))))................ (-19.02 = -18.55 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:31 2006