Locus 4372

Sequence ID 3R_DroMel_CAF1
Location 11,537,823 – 11,537,923
Length 100
Max. P 0.599163
window7146

overview

Window 6

Location 11,537,823 – 11,537,923
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 82.33
Mean single sequence MFE -25.40
Consensus MFE -14.07
Energy contribution -17.70
Covariance contribution 3.63
Combinations/Pair 1.10
Mean z-score -2.23
Structure conservation index 0.55
SVM decision value 0.13
SVM RNA-class probability 0.599163
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11537823 100 + 27905053
CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUAGGUAGUUCGGCAGUGUCGAGGGAUCGGCGGAGGUGGAUUUGCCAAAGGGGAGAUGUGGAAAU
(((.....)))...............(((((((((((.(((((.((.((..((((((....))))))...)).)).)))))...)))))))))))..... ( -27.40)
>DroSec_CAF1 71645 100 + 1
CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUAGGUAGUUCGGCAGUGUCGAGGGAUCGGCGGAGGUGGAUUUGCCGAAGGGUAGAUGUGGAAAU
(((.....)))...............(((((((((((.(((((.((.((..((((((....))))))...)).)).)))))..)))).)))))))..... ( -25.30)
>DroYak_CAF1 70325 100 + 1
CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUAGGUAGUUCGGCAGUGUCGAGGGAUCGGCGGAGGUGGACUUGCCGAGGGGGGAAUGUGGAAAU
(((.....)))...............(((((((((((.(((((((((.(..((((((....))))))..).))))).))))...)))))))))))..... ( -30.50)
>DroAna_CAF1 157837 86 + 1
CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUUCGUAUUUCAGGGGUGUCACGGGA-----------GGAUUUCCCAACAUAGAAA---GGAAUA
(((.....)))....................((((((((.(((....((((.(((.(....-----------)))).))))...)))))))---)))).. ( -18.40)
>consensus
CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUAGGUAGUUCGGCAGUGUCGAGGGAUCGGCGGAGGUGGAUUUGCCAAAGGGGAAAUGUGGAAAU
(((.....)))...............(((((((((((.(((((.((.((..((((((....))))))...)).)).)))))...)))))))))))..... (-14.07 = -17.70 +   3.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:30 2006