Locus 4368

Sequence ID 3R_DroMel_CAF1
Location 11,526,716 – 11,526,819
Length 103
Max. P 0.624021
window7141

overview

Window 1

Location 11,526,716 – 11,526,819
Length 103
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 83.60
Mean single sequence MFE -20.67
Consensus MFE -18.87
Energy contribution -18.37
Covariance contribution -0.50
Combinations/Pair 1.12
Mean z-score -1.34
Structure conservation index 0.91
SVM decision value 0.19
SVM RNA-class probability 0.624021
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11526716 103 - 27905053
AAAAAAAAAAAAAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUACGUCUCC---------UAUUUGUGCACCGUGAAAAUAGGCAAUUUAUGUUUUUAAAUAAAGAGA
................(((....(((((....))...(((((.............---------....)))))............)))..(((((........)))))))). ( -19.93)
>DroSec_CAF1 60292 99 - 1
AAAA----AGAAAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUAAGUCUCC---------UAUUUGUGCACCGUGAAAAUAGGCAAUUUAUGUUUUCCAAUAAAGAGA
....----........(((....(((((....))...(((((.............---------....)))))............)))..(((((........)))))))). ( -19.93)
>DroEre_CAF1 63816 103 - 1
AA---------AAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUACGUCUCCUAUUUCUCCUAUUUAUGCACCGAGAAAAUUGGCAAUUUAUGCUCUUAAGCAAAGAGA
..---------.....(((....(((((....)).......................((((((.............))))))...)))......((((....))))..))). ( -19.52)
>DroYak_CAF1 59029 94 - 1
AA---------AAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUAGGUCUCU---------UAUUUGUGCACCGGGAAAAUUGGCAAUUUAUGCUUUGAAGCAAAGAGA
..---------.....(((....(((((....))...(((((....((((...))---------))..)))))............)))......((((....))))..))). ( -23.30)
>consensus
AA_________AAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUACGUCUCC_________UAUUUGUGCACCGUGAAAAUAGGCAAUUUAUGCUUUUAAACAAAGAGA
................(((....(((((....))...(((((..........................)))))............)))......((((....))))..))). (-18.87 = -18.37 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:26 2006