Locus 4364

Sequence ID 3R_DroMel_CAF1
Location 11,504,084 – 11,504,175
Length 91
Max. P 0.990748
window7134

overview

Window 4

Location 11,504,084 – 11,504,175
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 96.48
Mean single sequence MFE -18.24
Consensus MFE -16.98
Energy contribution -16.78
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.77
Structure conservation index 0.93
SVM decision value 2.23
SVM RNA-class probability 0.990748
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11504084 91 - 27905053
GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUGUUUCACAUUUUAUUUCAUUUUUGUUGGCCGUUUGACCC
(((((...(((....(((((..((((((((..((...((((((....)))))).....))...)))))))).....))))))))))))).. ( -18.60)
>DroSec_CAF1 38091 91 - 1
GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUGUUUCACAUUUUAUUUCAUUUUUGUUGGCCGUUUGACCC
(((((...(((....(((((..((((((((..((...((((((....)))))).....))...)))))))).....))))))))))))).. ( -18.60)
>DroSim_CAF1 39199 91 - 1
GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUGUUUCACAUUUUAUUUCAUUUUUGUUGGCCGUUUGACCC
(((((...(((....(((((..((((((((..((...((((((....)))))).....))...)))))))).....))))))))))))).. ( -18.60)
>DroEre_CAF1 41654 91 - 1
GUCAAAAAGAGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUCUAUUUAUUUUACAUUUUAUUUCAUUUUUGUUGGGCGUUUGACCC
((((((.........(((.(((((((((((..((...((((((....)))))).....))...))))))))....))).))).)))))).. ( -17.50)
>DroYak_CAF1 36169 91 - 1
GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUAUUUCACAUUUUAUUUUAUUUUUGUUGGGCGUUUGACCC
((((((...(((((((..((((((((((((..(((.....)))........)))))))))))).........)))))))....)))))).. ( -17.90)
>consensus
GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUGUUUCACAUUUUAUUUCAUUUUUGUUGGCCGUUUGACCC
((((((...(((((((..((((((((((((..(((.....)))........)))))))))))).........)))))))....)))))).. (-16.98 = -16.78 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:19 2006